Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 3.4e-80 301.6 152 100.0
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.0e-36 155.2 131 65.6
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 8.8e-36 154.1 116 67.2
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 8.8e-36 154.1 131 66.4
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 5.9e-32 141.4 135 57.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 3.2e-30 135.6 125 60.0
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.6e-29 132.1 131 56.5
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.4e-28 130.2 153 51.6
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 6.8e-28 127.9 143 51.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 2.0e-27 126.3 145 51.0
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 2.8e-26 122.5 111 56.8
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 4.8e-26 121.7 126 57.9
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 4.8e-26 121.7 131 55.7
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.4e-25 119.4 145 49.7
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 3.1e-25 119.0 150 54.7
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 3.1e-25 119.0 88 64.8
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.1e-25 118.6 81 70.4
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.1e-25 118.6 81 70.4
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.1e-25 118.6 81 70.4
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 4.1e-25 118.6 136 55.1
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 5.4e-25 118.2 78 71.8
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 7.0e-25 117.9 142 52.8
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 7.0e-25 117.9 88 63.6
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.2e-24 117.1 126 54.8
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.2e-24 117.1 87 70.1
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.6e-24 116.7 135 54.8
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.6e-24 116.7 140 48.6
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.0e-24 116.3 135 54.8
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 2.7e-24 115.9 136 50.7
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.7e-24 115.9 140 48.6
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 3.5e-24 115.5 135 54.1
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 4.5e-24 115.2 102 63.7
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 4.5e-24 115.2 119 54.6
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 5.9e-24 114.8 147 49.0
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 5.9e-24 114.8 122 54.9
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 1.0e-23 114.0 138 50.7
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.3e-23 113.6 64 78.1
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.3e-23 113.6 80 70.0
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.7e-23 113.2 137 50.4
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.7e-23 113.2 135 54.1
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 1.7e-23 113.2 123 55.3
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 2.2e-23 112.8 139 52.5
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.9e-23 112.5 82 70.7
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 2.9e-23 112.5 141 52.5
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 5.0e-23 111.7 123 54.5
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 6.5e-23 111.3 135 51.9
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.5e-23 111.3 146 50.0
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 6.5e-23 111.3 111 55.0
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.1e-22 110.5 77 71.4
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.1e-22 110.5 84 71.4
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.5e-22 110.2 70 72.9
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.5e-22 110.2 80 67.5
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.2e-22 108.6 139 50.4
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 5.5e-22 108.2 74 73.0
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 7.2e-22 107.8 82 72.0
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 1.2e-21 107.1 114 57.0
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.2e-21 107.1 125 52.8
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 1.6e-21 106.7 79 69.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.6e-21 106.7 137 49.6
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 2.1e-21 106.3 138 47.8
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.8e-21 105.9 86 60.5
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 4.7e-21 105.1 145 46.9
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 4.7e-21 105.1 128 53.1
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 6.1e-21 104.8 135 50.4
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 6.1e-21 104.8 108 54.6
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 1.0e-20 104.0 90 57.8
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 5.2e-20 101.7 56 78.6
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 5.2e-20 101.7 54 81.5
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 5.2e-20 101.7 69 71.0
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 6.8e-20 101.3 90 63.3
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.5e-19 100.1 97 52.6
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.0e-19 99.8 78 65.4
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 3.4e-19 99.0 119 50.4
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 4.4e-19 98.6 137 47.4
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 4.4e-19 98.6 79 63.3
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 4.4e-19 98.6 52 82.7
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 4.4e-19 98.6 120 50.8
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 4.4e-19 98.6 52 82.7
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 5.7e-19 98.2 78 67.9
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 9.8e-19 97.4 71 67.6
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.3e-18 97.1 132 46.2
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 2.8e-18 95.9 80 61.2
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 3.7e-18 95.5 132 45.5
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 3.7e-18 95.5 132 45.5
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 3.7e-18 95.5 132 45.5
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 3.7e-18 95.5 52 80.8
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 3.7e-18 95.5 109 49.5
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 6.3e-18 94.7 130 46.2
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 6.3e-18 94.7 130 46.2
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 6.3e-18 94.7 142 43.7
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 8.3e-18 94.4 78 61.5
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 8.3e-18 94.4 80 63.8
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.4e-17 93.6 77 61.0
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 1.4e-17 93.6 127 51.2
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.8e-17 93.2 102 48.0
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 2.4e-17 92.8 125 45.6
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.1e-17 92.4 124 44.4
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.2e-16 90.5 132 47.0
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.2e-16 90.5 124 46.0
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.6e-16 90.1 65 67.7
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 3.5e-16 89.0 142 45.8
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 4.5e-16 88.6 77 58.4
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.3e-15 87.0 75 58.7
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.3e-15 86.3 131 41.2
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 2.3e-15 86.3 48 79.2
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 8.6e-15 84.3 43 83.7
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.9e-14 83.2 78 53.8
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.5e-14 82.8 48 70.8
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 5.6e-14 81.6 49 65.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 3.6e-13 79.0 48 64.6
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 1.8e-12 76.6 110 50.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 8.9e-12 74.3 87 46.0
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 2.0e-11 73.2 88 52.3
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 5.7e-11 71.6 41 80.5
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 7.5e-11 71.2 114 48.2
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 3.7e-10 68.9 107 48.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 4.9e-10 68.6 85 48.2
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.8e-09 66.6 45 60.0
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 2.4e-09 66.2 56 60.7
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 2.0e-08 63.2 101 45.5
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 1.0e-07 60.8 69 53.6
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.1e-06 57.4 68 52.9
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.1e-06 57.4 68 52.9
C03p29830 Brassica napus HOM05D002423 ORTHO05D002632 9.5e-06 54.3 33 81.8


User provided reference genes

Program Settings