Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 0.0e+00 1571.6 786 100.0
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 0.0e+00 1139.0 790 71.8
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 0.0e+00 1132.1 792 71.5
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 0.0e+00 1128.2 792 71.1
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 0.0e+00 1098.6 794 68.8
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 2.6e-309 1065.1 792 66.3
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 7.2e-283 977.2 799 59.3
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 1.1e-278 963.4 800 59.9
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 1.4e-273 946.4 797 59.7
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 9.2e-270 933.7 786 60.2
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 4.5e-269 931.4 795 58.9
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 4.5e-269 931.4 791 61.2
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 1.3e-268 929.9 794 58.9
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 1.2e-266 923.3 798 58.1
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 2.8e-266 922.2 786 59.4
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 4.7e-266 921.4 786 58.8
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 1.8e-265 919.5 803 58.4
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 1.8e-265 919.5 806 58.3
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 3.4e-264 915.2 791 58.3
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.8e-264 913.7 800 59.1
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 2.2e-263 912.5 797 57.7
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 8.3e-263 910.6 790 59.0
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 2.0e-261 906.0 786 58.8
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 1.7e-260 902.9 806 57.8
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 2.3e-260 902.5 797 59.2
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.1e-259 900.2 791 58.3
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 1.1e-259 900.2 788 58.2
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 1.1e-259 900.2 789 58.0
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 2.5e-259 899.0 790 57.7
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 9.5e-259 897.1 793 57.8
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 9.5e-259 897.1 789 57.8
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 3.6e-258 895.2 802 57.7
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 4.7e-258 894.8 791 58.0
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 2.3e-257 892.5 850 55.8
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 6.8e-257 891.0 793 59.1
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 1.2e-256 890.2 787 56.7
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 4.4e-256 888.3 795 57.6
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 5.8e-256 887.9 791 57.5
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.9e-255 885.6 791 57.4
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 4.9e-255 884.8 792 58.6
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 4.9e-255 884.8 792 55.9
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.4e-254 883.2 797 56.7
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 1.9e-254 882.9 796 56.9
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 4.1e-254 881.7 800 56.1
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 5.4e-254 881.3 798 58.4
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 7.8e-253 877.5 794 56.7
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 5.1e-252 874.8 796 57.5
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 6.6e-252 874.4 852 54.9
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 3.3e-251 872.1 813 57.1
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 4.7e-250 868.2 801 55.8
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 8.1e-250 867.5 785 56.3
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 2.9e-247 859.0 791 55.9
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 1.6e-245 853.2 795 54.2
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 5.1e-244 848.2 847 52.9
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 5.1e-244 848.2 818 54.2
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 2.0e-240 836.3 784 53.4
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 7.6e-240 834.3 811 53.3
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 4.9e-239 831.6 794 54.8
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.1e-238 830.5 811 52.8
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 2.7e-237 825.9 637 65.6
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 1.7e-236 823.2 788 53.6
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 8.1e-234 814.3 792 53.0
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 1.4e-233 813.5 797 52.9
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 9.0e-233 810.8 795 53.5
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 1.5e-232 810.1 802 52.2
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 3.2e-230 802.4 800 52.6
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 2.1e-229 799.7 796 52.6
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 6.0e-229 798.1 793 52.0
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 1.3e-226 790.4 793 52.7
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 3.6e-226 788.9 800 51.4
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 3.6e-226 788.9 795 50.9
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 9.0e-225 784.3 800 51.1
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.2e-224 783.9 635 62.4
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 1.2e-224 783.9 796 51.1
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 7.6e-224 781.2 796 51.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 2.2e-223 779.6 796 51.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.2e-221 773.9 761 53.0
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 2.1e-221 773.1 796 52.4
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 4.6e-221 771.9 800 51.1
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.4e-217 759.6 729 54.5
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 2.0e-216 756.5 793 50.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 2.5e-214 749.6 794 49.6
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 3.2e-214 749.2 792 51.9
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 3.0e-212 742.7 792 51.9
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 6.7e-212 741.5 777 49.5
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 9.0e-209 731.1 829 50.3
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 3.0e-204 716.1 779 50.1
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 4.1e-201 705.7 807 47.1
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 1.6e-189 667.2 678 51.5
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 4.4e-187 659.1 793 46.8
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 3.1e-185 652.9 584 57.7
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 5.9e-184 648.7 644 54.0
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 9.8e-171 604.7 798 43.2
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 1.7e-154 550.8 599 50.8
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 1.4e-145 521.2 773 40.8
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.7e-122 444.5 788 37.8
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 6.6e-119 432.6 809 36.2
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 5.6e-102 376.3 838 33.8
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 1.6e-88 331.6 840 30.6
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 4.6e-88 330.1 252 63.9
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 9.7e-86 322.4 305 53.4
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 4.8e-85 320.1 411 44.0
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 2.0e-83 314.7 253 64.0
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 8.8e-79 299.3 285 52.3
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 2.8e-77 294.3 285 51.6
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 6.7e-71 273.1 253 54.9
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 4.8e-69 266.9 346 46.0
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 3.8e-50 204.1 189 60.3
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.4e-47 195.7 144 63.2
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 1.5e-46 192.2 223 43.9
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 1.2e-43 182.6 207 44.0
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 2.4e-36 158.3 275 37.8
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 2.7e-35 154.8 166 46.4
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-35 154.8 1020 22.1
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 1.9e-25 122.1 87 69.0
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 6.0e-19 100.5 115 43.5
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 6.2e-16 90.5 210 31.9
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 2.2e-13 82.0 68 50.0
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 3.2e-12 78.2 138 34.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 8.6e-10 70.1 45 64.4
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 5.2e-07 60.8 49 59.2
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 7.6e-06 57.0 48 56.2


User provided reference genes

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