Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.1e-122 444.9 682 100.0
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 6.7e-51 206.5 217 54.8
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 5.3e-48 196.8 186 58.1
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.1e-40 172.6 216 45.4
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 2.4e-40 171.4 215 48.8
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 7.0e-40 169.9 222 45.5
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.2e-39 169.1 184 50.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.6e-39 167.9 216 44.4
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 2.6e-39 167.9 192 46.4
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 4.5e-39 167.2 216 44.0
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.0e-38 166.0 208 46.2
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.0e-38 166.0 159 53.5
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.7e-38 165.2 208 47.1
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 2.9e-38 164.5 183 49.2
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 6.5e-38 163.3 159 52.8
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 6.5e-38 163.3 226 43.4
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 2.5e-37 161.4 215 45.6
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 3.2e-37 161.0 167 47.9
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 5.5e-37 160.2 165 50.9
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 5.5e-37 160.2 133 57.9
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 7.2e-37 159.8 165 49.7
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.1e-36 158.3 195 44.1
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 2.1e-36 158.3 190 44.7
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 2.7e-36 157.9 220 43.2
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 2.7e-36 157.9 216 43.1
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 3.6e-36 157.5 223 43.5
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 8.0e-36 156.4 214 41.6
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 1.8e-35 155.2 178 44.4
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 2.3e-35 154.8 156 50.0
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.5e-34 152.1 223 41.3
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 2.0e-34 151.8 223 41.7
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 2.0e-34 151.8 166 45.2
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.6e-34 151.4 219 41.1
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.3e-33 149.1 163 49.7
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 1.7e-33 148.7 235 41.3
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 2.2e-33 148.3 224 40.6
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 8.2e-33 146.4 164 47.0
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.8e-32 145.2 185 43.2
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 5.3e-32 143.7 159 49.1
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 9.1e-32 142.9 167 44.3
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.2e-31 142.5 217 42.4
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 1.6e-31 142.1 159 49.1
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 2.0e-31 141.7 210 42.4
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 2.7e-31 141.4 160 48.1
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 2.7e-31 141.4 160 48.1
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 3.5e-31 141.0 160 48.1
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 7.7e-31 139.8 198 42.9
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 1.7e-30 138.7 202 43.6
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 5.0e-30 137.1 192 41.1
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 5.0e-30 137.1 192 41.1
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 6.5e-30 136.7 173 44.5
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 8.5e-30 136.3 208 40.4
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 8.5e-30 136.3 142 46.5
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 9.4e-29 132.9 216 38.4
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 1.6e-28 132.1 225 39.1
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 8.0e-28 129.8 146 45.9
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 8.0e-28 129.8 140 47.1
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 8.0e-28 129.8 171 40.9
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 2.0e-26 125.2 213 37.1
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.6e-26 124.8 167 41.9
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 5.7e-26 123.6 141 46.1
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 9.8e-26 122.9 208 38.9
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 2.2e-25 121.7 163 42.9
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 2.8e-25 121.3 163 42.3
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 3.7e-25 120.9 215 37.7
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 8.3e-25 119.8 170 41.8
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.1e-24 119.4 164 42.7
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.4e-24 119.0 164 39.6
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.8e-24 118.6 165 42.4
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 2.4e-24 118.2 138 43.5
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 4.1e-24 117.5 191 39.3
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 4.1e-24 117.5 191 39.3
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 9.1e-24 116.3 170 37.1
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 1.2e-23 115.9 138 42.8
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 2.0e-23 115.2 141 43.3
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 7.7e-23 113.2 176 36.4
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 7.7e-23 113.2 97 55.7
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.7e-22 112.1 207 36.7
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 2.2e-22 111.7 183 35.0
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 2.2e-22 111.7 125 45.6
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 1.6e-20 105.5 113 49.6
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 2.1e-20 105.1 123 45.5
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 3.6e-20 104.4 115 51.3
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 4.7e-20 104.0 102 51.0
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 3.0e-19 101.3 88 56.8
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 4.0e-19 100.9 165 36.4
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.2e-18 99.4 115 48.7
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.2e-18 99.4 158 36.1
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 7.5e-18 96.7 158 36.1
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.7e-17 95.5 109 45.9
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 4.1e-16 90.9 148 38.5
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.0e-16 90.1 122 45.9
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 5.6e-13 80.5 81 53.1
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 4.7e-12 77.4 82 48.8
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 8.0e-12 76.6 82 84.1
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 5.2e-11 73.9 82 63.4
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 5.2e-11 73.9 172 29.1
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 6.8e-11 73.6 82 63.4
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 8.9e-11 73.2 82 62.2
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.6e-10 71.6 82 62.2
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 4.4e-10 70.9 87 37.9
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 7.5e-10 70.1 92 37.0
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 6.4e-09 67.0 79 63.3
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 3.2e-08 64.7 82 80.5
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 3.5e-07 61.2 45 62.2
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 1.7e-06 58.9 82 43.9


User provided reference genes

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