Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14518 Selenicereus undatus HOM05D003563 ORTHO05D005325 6.3e-41 170.2 81 100.0
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 1.1e-13 79.7 69 59.4
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 1.5e-13 79.3 48 81.2
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 1.9e-13 79.0 45 80.0
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 2.5e-13 78.6 43 83.7
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 2.5e-13 78.6 47 76.6
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 2.5e-13 78.6 43 83.7
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 2.5e-13 78.6 43 83.7
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 2.5e-13 78.6 43 83.7
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 4.3e-13 77.8 53 67.9
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 4.3e-13 77.8 47 78.7
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 4.3e-13 77.8 43 86.0
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 5.6e-13 77.4 45 80.0
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 5.6e-13 77.4 47 78.7
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 7.3e-13 77.0 47 78.7
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 9.5e-13 76.6 45 77.8
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 9.5e-13 76.6 47 78.7
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 9.5e-13 76.6 47 78.7
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 9.5e-13 76.6 47 76.6
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 9.5e-13 76.6 47 76.6
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 1.2e-12 76.3 47 74.5
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.2e-12 76.3 47 76.6
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 1.2e-12 76.3 48 77.1
BcaB07g31057 Brassica carinata HOM05D003563 ORTHO05D005325 1.6e-12 75.9 75 56.0
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.6e-12 75.9 50 70.0
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.1e-12 75.5 47 74.5
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 2.1e-12 75.5 47 74.5
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 2.1e-12 75.5 47 74.5
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 2.1e-12 75.5 47 74.5
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 2.1e-12 75.5 47 76.6
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 2.1e-12 75.5 45 80.0
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 2.8e-12 75.1 47 74.5
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.8e-12 75.1 47 76.6
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 3.6e-12 74.7 47 76.6
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 3.6e-12 74.7 47 76.6
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 3.6e-12 74.7 47 74.5
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 3.6e-12 74.7 43 81.4
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 4.7e-12 74.3 52 71.2
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 8.1e-12 73.6 47 74.5
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 8.1e-12 73.6 43 81.4
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 8.1e-12 73.6 43 81.4
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 1.1e-11 73.2 47 74.5
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 1.1e-11 73.2 39 87.2
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 1.1e-11 73.2 43 79.1
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 1.1e-11 73.2 47 72.3
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 1.1e-11 73.2 47 72.3
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 1.4e-11 72.8 37 91.9
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 1.4e-11 72.8 43 79.1
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 1.4e-11 72.8 43 79.1
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-11 72.8 43 81.4
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-11 72.8 43 81.4
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 1.8e-11 72.4 43 79.1
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 1.8e-11 72.4 43 79.1
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 1.8e-11 72.4 47 72.3
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.8e-11 72.4 43 79.1
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.8e-11 72.4 43 79.1
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 2.3e-11 72.0 43 79.1
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 2.3e-11 72.0 43 79.1
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 2.3e-11 72.0 48 75.0
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 3.1e-11 71.6 47 72.3
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 3.1e-11 71.6 43 79.1
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 3.1e-11 71.6 43 79.1
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 4.0e-11 71.2 43 76.7
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 4.0e-11 71.2 47 72.3
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 5.2e-11 70.9 43 76.7
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 5.2e-11 70.9 39 84.6
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 8.9e-11 70.1 41 78.0
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 8.9e-11 70.1 43 76.7
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 1.2e-10 69.7 43 76.7
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 1.2e-10 69.7 41 78.0
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 1.2e-10 69.7 43 76.7
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 1.2e-10 69.7 43 76.7
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.5e-10 69.3 39 84.6
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.5e-10 69.3 39 82.1
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 2.6e-10 68.6 43 74.4
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 4.4e-10 67.8 43 74.4
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 5.8e-10 67.4 41 78.0
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 1.3e-09 66.2 41 65.9
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.7e-09 65.9 41 73.2
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 2.9e-09 65.1 39 76.9
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 4.9e-09 64.3 43 67.4
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 2.4e-08 62.0 43 62.8
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 2.4e-08 62.0 46 65.2
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.4e-08 62.0 37 78.4
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.1e-07 58.9 43 60.5


User provided reference genes

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