Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14487 Selenicereus undatus HOM05D001579 ORTHO05D002313 3.2e-53 211.5 106 100.0
Hund14633 Selenicereus undatus HOM05D001579 ORTHO05D002313 1.5e-29 132.9 69 95.7
AUR62007155 Chenopodium quinoa HOM05D001579 ORTHO05D002313 9.8e-26 120.2 69 84.1
AUR62018856 Chenopodium quinoa HOM05D001579 ORTHO05D002313 1.3e-25 119.8 69 84.1
EL10Ac6g13130 Beta vulgaris HOM05D001579 ORTHO05D002313 8.3e-25 117.1 69 79.7
Haze_02387 Corylus avellana HOM05D001579 ORTHO05D002313 8.3e-25 117.1 69 81.2
Cfa005001 Carpinus fangiana HOM05D001579 ORTHO05D002313 1.4e-24 116.3 69 81.2
Lj5A197T62 Lonicera japonica HOM05D001579 ORTHO05D002313 1.9e-24 115.9 69 78.3
arahy.Tifrunner.gnm1.ann1.2Z1PYU Arachis hypogaea HOM05D001579 ORTHO05D002313 3.2e-24 115.2 69 81.2
arahy.Tifrunner.gnm1.ann1.T9S2Z0 Arachis hypogaea HOM05D001579 ORTHO05D002313 7.0e-24 114.0 69 79.7
Ca_12962_v3 Cicer arietinum L. HOM05D001579 ORTHO05D002313 7.0e-24 114.0 69 81.2
Ca_25601_v3 Cicer arietinum L. HOM05D001579 ORTHO05D002313 7.0e-24 114.0 69 81.2
PGR142G4340 Punica granatum HOM05D001579 ORTHO05D002313 7.0e-24 114.0 69 75.4
Lalb_Chr08g0230651 Lupinus albus HOM05D001579 ORTHO05D002313 9.2e-24 113.6 69 81.2
Medtr3g014010 Medicago truncatula HOM05D001579 ORTHO05D002313 9.2e-24 113.6 69 79.7
Phvul.005G024900 Phaseolus vulgaris HOM05D001579 ORTHO05D002313 1.6e-23 112.8 69 78.3
CSS0002389 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 2.0e-23 112.5 69 76.8
CSS0008693 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 2.0e-23 112.5 69 76.8
CSS0027945 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 2.0e-23 112.5 69 76.8
CSS0038554 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 2.0e-23 112.5 69 76.8
TAR376G0604 Trochodendron aralioides HOM05D001579 ORTHO05D002313 2.7e-23 112.1 69 73.9
VMungo1080G0643 Vigna mungo HOM05D001579 ORTHO05D002313 2.7e-23 112.1 69 75.4
Ah.12g054060 Amaranthus hybridus HOM05D001579 ORTHO05D002313 3.5e-23 111.7 69 78.3
Sc01g0008060 Simmondsia chinensis HOM05D001579 ORTHO05D002313 3.5e-23 111.7 69 76.8
Sc01g0008070 Simmondsia chinensis HOM05D001579 ORTHO05D002313 3.5e-23 111.7 69 76.8
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 4.6e-23 111.3 69 73.9
TWI12G1144 Tripterygium wilfordii HOM05D001579 ORTHO05D002313 6.0e-23 110.9 68 75.0
HanXRQChr08g0221901 Helianthus annuus HOM05D001579 ORTHO05D002313 7.8e-23 110.5 69 75.4
CiPaw.06G135300 Carya illinoinensis HOM05D001579 ORTHO05D002313 1.0e-22 110.2 69 76.8
QL11p043888 Quercus lobata HOM05D001579 ORTHO05D002313 1.0e-22 110.2 69 75.4
HanXRQChr05g0135391 Helianthus annuus HOM05D001579 ORTHO05D002313 1.3e-22 109.8 71 71.8
Glyma.04G134300 Glycine max HOM05D001579 ORTHO05D002313 2.3e-22 109.0 69 75.4
Eucgr.G01658 Eucalyptus grandis HOM05D001579 ORTHO05D002313 3.9e-22 108.2 69 73.9
MBI17_g30518_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D002313 3.9e-22 108.2 65 76.9
Psat5g221560 Pisum sativum HOM05D001579 ORTHO05D002313 3.9e-22 108.2 69 75.4
vmacro02104 Vaccinium macrocarpon HOM05D001579 ORTHO05D002313 6.6e-22 107.5 69 73.9
DCAR_003673 Daucus carota HOM05D001579 ORTHO05D002313 8.6e-22 107.1 69 71.0
Glyma.11G128100 Glycine max HOM05D001579 ORTHO05D002313 8.6e-22 107.1 69 76.8
BolC2t06693H Brassica oleracea HOM05D001579 ORTHO05D002313 1.1e-21 106.7 73 69.9
Solyc08g068220.3 Solanum lycopersicum HOM05D001579 ORTHO05D002313 1.1e-21 106.7 69 78.3
Ciclev10002763m.g Citrus clementina HOM05D001579 ORTHO05D002313 1.5e-21 106.3 68 73.5
Nitab4.5_0000052g0060 Nicotiana tabacum HOM05D001579 ORTHO05D002313 1.5e-21 106.3 69 78.3
BcaB01g05069 Brassica carinata HOM05D001579 ORTHO05D002313 1.9e-21 105.9 73 69.9
CARHR198090 Cardamine hirsuta HOM05D001579 ORTHO05D002313 1.9e-21 105.9 73 69.9
Eucgr.E01058 Eucalyptus grandis HOM05D001579 ORTHO05D002313 1.9e-21 105.9 69 71.0
Lj3g0027215 Lotus japonicus HOM05D001579 ORTHO05D002313 1.9e-21 105.9 69 73.9
Nitab4.5_0003338g0020 Nicotiana tabacum HOM05D001579 ORTHO05D002313 2.5e-21 105.5 69 78.3
Potri.003G009500 Populus trichocarpa HOM05D001579 ORTHO05D002313 2.5e-21 105.5 69 72.5
A03p07040 Brassica napus HOM05D001579 ORTHO05D002313 3.3e-21 105.1 70 72.9
BraA03t10026Z Brassica rapa HOM05D001579 ORTHO05D002313 3.3e-21 105.1 70 72.9
Sopen08g022080 Solanum pennellii HOM05D001579 ORTHO05D002313 3.3e-21 105.1 69 76.8
PGSC0003DMG400014498 Solanum tuberosum HOM05D001579 ORTHO05D002313 3.3e-21 105.1 69 76.8
A02p02960 Brassica napus HOM05D001579 ORTHO05D002313 4.3e-21 104.8 73 68.5
CAN.G309.92 Capsicum annuum HOM05D001579 ORTHO05D002313 4.3e-21 104.8 69 76.8
Cc02_g25870 Coffea canephora HOM05D001579 ORTHO05D002313 4.3e-21 104.8 69 72.5
ClCG02G015720 Citrullus lanatus HOM05D001579 ORTHO05D002313 5.6e-21 104.4 69 69.6
ECA233G2858 Erigeron canadensis HOM05D001579 ORTHO05D002313 5.6e-21 104.4 71 67.6
C03p08020 Brassica napus HOM05D001579 ORTHO05D002313 7.3e-21 104.0 70 72.9
Migut.B00235 Erythranthe guttata HOM05D001579 ORTHO05D002313 7.3e-21 104.0 69 75.4
Hma1.2p1_0203F.1_g086330 Hydrangea macrophylla HOM05D001579 ORTHO05D002313 7.3e-21 104.0 68 73.5
Aqoxy1G02258 Aquilegia oxysepala HOM05D001579 ORTHO05D002313 9.5e-21 103.6 69 73.9
Aqoxy5G01634 Aquilegia oxysepala HOM05D001579 ORTHO05D002313 9.5e-21 103.6 69 73.9
BraA02t05267Z Brassica rapa HOM05D001579 ORTHO05D002313 9.5e-21 103.6 73 67.1
Thhalv10014899m.g Eutrema salsugineum HOM05D001579 ORTHO05D002313 9.5e-21 103.6 73 68.5
Sed0017658 Sechium edule HOM05D001579 ORTHO05D002313 9.5e-21 103.6 69 68.1
Sed0021892 Sechium edule HOM05D001579 ORTHO05D002313 9.5e-21 103.6 71 66.2
BcaC04g18972 Brassica carinata HOM05D001579 ORTHO05D002313 1.2e-20 103.2 73 68.5
A10p23630 Brassica napus HOM05D000181 ORTHO05D002783 1.2e-20 103.2 73 68.5
BolC9t59031H Brassica oleracea HOM05D001579 ORTHO05D002313 1.2e-20 103.2 73 68.5
BraA10t44428Z Brassica rapa HOM05D000181 ORTHO05D002783 1.2e-20 103.2 73 68.5
Thhalv10001060m.g Eutrema salsugineum HOM05D001579 ORTHO05D002313 1.2e-20 103.2 73 68.5
Peaxi162Scf00523g00628 Petunia axillaris HOM05D001579 ORTHO05D002313 1.2e-20 103.2 69 76.8
Rhsim11G0177300 Rhododendron simsii HOM05D001579 ORTHO05D002313 1.2e-20 103.2 72 68.1
BolC3t13300H Brassica oleracea HOM05D001579 ORTHO05D002313 1.6e-20 102.8 70 71.4
MELO3C004251.2 Cucumis melo HOM05D001579 ORTHO05D002313 1.6e-20 102.8 69 68.1
Nitab4.5_0001567g0030 Nicotiana tabacum HOM05D001579 ORTHO05D002313 1.6e-20 102.8 69 73.9
Sp6g28850 Schrenkiella parvula HOM05D001579 ORTHO05D002313 1.6e-20 102.8 73 67.1
BcaB08g36915 Brassica carinata HOM05D001579 ORTHO05D002313 2.1e-20 102.4 70 71.4
C09p61890 Brassica napus HOM05D000181 ORTHO05D002783 2.1e-20 102.4 70 71.4
CAN.G1394.35 Capsicum annuum HOM05D001579 ORTHO05D002313 2.1e-20 102.4 69 75.4
Nitab4.5_0000664g0310 Nicotiana tabacum HOM05D001579 ORTHO05D002313 2.1e-20 102.4 69 72.5
Nn5g29611 Nelumbo nucifera HOM05D001579 ORTHO05D002313 2.8e-20 102.1 69 66.7
AT5G15220 Arabidopsis thaliana HOM05D001579 ORTHO05D002313 3.6e-20 101.7 73 68.5
CANSAT01G2541 Cannabis sativa HOM05D001579 ORTHO05D002313 3.6e-20 101.7 69 71.0
MSTRG.16809 Avicennia marina HOM05D001579 ORTHO05D002313 4.7e-20 101.3 72 68.1
CDE04G3362 Ceratophyllum demersum HOM05D001579 ORTHO05D002313 4.7e-20 101.3 64 71.9
PGSC0003DMG400018566 Solanum tuberosum HOM05D001579 ORTHO05D002313 8.1e-20 100.5 69 71.0
Thecc.08G027300 Theobroma cacao HOM05D001579 ORTHO05D002313 8.1e-20 100.5 68 67.6
vmacro11114 Vaccinium macrocarpon HOM05D001579 ORTHO05D002313 1.4e-19 99.8 69 68.1
Aa31LG11G14320 Aethionema arabicum HOM05D001579 ORTHO05D002313 1.8e-19 99.4 73 64.4
AL6G26070 Arabidopsis lyrata HOM05D001579 ORTHO05D002313 1.8e-19 99.4 73 67.1
DCAR_022974 Daucus carota HOM05D001579 ORTHO05D002313 1.8e-19 99.4 69 66.7
Duzib093G1629 Durio zibethinus HOM05D001579 ORTHO05D002313 1.8e-19 99.4 68 67.6
Manes.18G026600 Manihot esculenta HOM05D001579 ORTHO05D002313 1.8e-19 99.4 69 65.2
Sopen11g029000 Solanum pennellii HOM05D001579 ORTHO05D002313 1.8e-19 99.4 69 69.6
AT2G16930 Arabidopsis thaliana HOM05D001579 ORTHO05D002313 2.3e-19 99.0 73 67.1
FAN17G0073 Fragaria x ananassa HOM05D001579 ORTHO05D002313 2.3e-19 99.0 69 65.2
FAN22G1333 Fragaria x ananassa HOM05D001579 ORTHO05D002313 2.3e-19 99.0 69 65.2
Thhalv10014900m.g Eutrema salsugineum HOM05D001579 ORTHO05D002313 3.1e-19 98.6 74 64.9
Carub.0006s1340 Capsella rubella HOM05D001579 ORTHO05D002313 4.0e-19 98.2 70 70.0
QL02p008772 Quercus lobata HOM05D001579 ORTHO05D002313 4.0e-19 98.2 71 64.8
SalBow6G0262 Salvia bowleyana HOM05D001579 ORTHO05D002313 4.0e-19 98.2 69 69.6
Solyc11g071320.2 Solanum lycopersicum HOM05D001579 ORTHO05D002313 4.0e-19 98.2 69 68.1
CsaV3_2G005370 Cucumis sativus L. HOM05D001579 ORTHO05D002313 5.2e-19 97.8 69 65.2
Cpa.g.sc62.153 Carica papaya HOM05D001579 ORTHO05D002313 6.8e-19 97.4 58 77.6
FvH4_4g12570 Fragaria vesca HOM05D001579 ORTHO05D002313 6.8e-19 97.4 69 63.8
FAN12G4145 Fragaria x ananassa HOM05D001579 ORTHO05D002313 6.8e-19 97.4 69 63.8
RcHm_v2.0_Chr7g0222081 Rosa chinensis HOM05D001579 ORTHO05D002313 1.2e-18 96.7 69 66.7
Nn3g20703 Nelumbo nucifera HOM05D001579 ORTHO05D002313 1.5e-18 96.3 69 69.6
COL.COLO4_26308 Corchorus olitorius HOM05D001579 ORTHO05D002313 2.0e-18 95.9 68 64.7
FAN07G1965 Fragaria x ananassa HOM05D001579 ORTHO05D002313 2.6e-18 95.5 69 63.8
FAN24G1906 Fragaria x ananassa HOM05D001579 ORTHO05D002313 2.6e-18 95.5 69 65.2
Gohir.A01G115600 Gossypium hirsutum HOM05D001579 ORTHO05D002313 2.6e-18 95.5 68 64.7
THA.LOC104821028 Tarenaya hassleriana HOM05D001579 ORTHO05D002313 2.6e-18 95.5 69 65.2
MD07G1108700 Malus domestica HOM05D001579 ORTHO05D002313 3.4e-18 95.1 69 63.8
MD10G1076100 Malus domestica HOM05D001579 ORTHO05D002313 3.4e-18 95.1 69 63.8
SalBow6G3487 Salvia bowleyana HOM05D001579 ORTHO05D002313 5.8e-18 94.4 69 66.7
PSO832G2152 Papaver somniferum HOM05D001579 ORTHO05D002313 7.5e-18 94.0 68 63.2
THA.LOC104822359 Tarenaya hassleriana HOM05D001579 ORTHO05D002313 7.5e-18 94.0 69 65.2
GSVIVG01031969001 Vitis vinifera HOM05D001579 ORTHO05D002313 9.8e-18 93.6 58 77.6
CSS0050394 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 1.3e-17 93.2 63 71.4
PSO478G2630 Papaver somniferum HOM05D001579 ORTHO05D002313 1.3e-17 93.2 70 62.9
Prupe.8G096700 Prunus persica HOM05D001579 ORTHO05D002313 1.3e-17 93.2 69 63.8
Os08g0404200 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D002313 1.7e-17 92.8 67 67.2
Os08g0404300 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D002313 1.7e-17 92.8 67 67.2
Oeu055572.1 Olea europaea HOM05D001579 ORTHO05D002313 3.7e-17 91.7 60 73.3
Gorai.002G127800 Gossypium raimondii HOM05D001579 ORTHO05D002313 4.9e-17 91.3 68 64.7
Os04g0321500 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D002313 4.9e-17 91.3 67 65.7
unitig_744.g24250 Utricularia gibba HOM05D001579 ORTHO05D002313 6.4e-17 90.9 69 63.8
PSO063G7535 Papaver somniferum HOM05D001579 ORTHO05D002313 1.4e-16 89.7 70 61.4
PSO832G2736 Papaver somniferum HOM05D001579 ORTHO05D002313 1.9e-16 89.4 70 61.4
PSO017G3213 Papaver somniferum HOM05D001579 ORTHO05D002313 4.1e-16 88.2 70 60.0
Sabra03G0004900 Salix brachista HOM05D001579 ORTHO05D002313 1.6e-15 86.3 103 46.6
Zm00001eb171240 Zea mays HOM05D001579 ORTHO05D002313 1.6e-15 86.3 63 66.7
HPP92_012273 Vanilla planifolia HOM05D001579 ORTHO05D002313 2.7e-15 85.5 67 58.2
Dinv23520 Davidia involucrata HOM05D001579 ORTHO05D002313 7.8e-15 84.0 53 75.5
SalBow6G3810 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.3e-14 83.2 72 61.1
SalBow6G2679 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.9e-14 81.6 72 59.7
ATR0706G196 Amborella trichopoda HOM05D001579 ORTHO05D002313 6.6e-14 80.9 68 61.8
C02p07600 Brassica napus HOM05D001579 ORTHO05D002313 1.2e-12 76.6 85 52.9
SHI05393 Sapria himalayana HOM05D001579 ORTHO05D002313 3.6e-12 75.1 103 43.7
CSS0006380 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 4.7e-12 74.7 40 87.5
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 4.7e-12 74.7 41 87.8
BcaNung03321 Brassica carinata HOM05D001579 ORTHO05D002313 2.3e-11 72.4 45 77.8
CSS0042542 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D002313 6.8e-11 70.9 38 89.5
Lj6g0008914 Lotus japonicus HOM05D001579 ORTHO05D002313 4.4e-10 68.2 70 57.1
SEGI_06804 Sequoiadendron giganteum HOM05D001579 ORTHO05D002313 4.4e-10 68.2 43 76.7
SEGI_30305 Sequoiadendron giganteum HOM05D001579 ORTHO05D002313 4.4e-10 68.2 43 76.7
BcaC03g13420 Brassica carinata HOM05D001579 ORTHO05D002313 6.4e-09 64.3 32 93.8
Mapoly0102s0033 Marchantia polymorpha HOM05D001579 ORTHO05D002313 1.4e-08 63.2 51 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4978 Anthoceros agrestis HOM05D001579 ORTHO05D002313 1.9e-08 62.8 38 78.9
Pp3c19_19080 Physcomitrium patens HOM05D001579 ORTHO05D002313 2.4e-08 62.4 40 70.0
FvH4_2g08800 Fragaria vesca HOM05D001579 ORTHO05D002313 3.2e-08 62.0 33 84.8
CBR_g44936 Chara braunii HOM05D001579 ORTHO05D002313 1.2e-07 60.1 36 77.8
CBR_g74659 Chara braunii HOM05D001579 ORTHO05D002313 1.2e-07 60.1 36 77.8
FAN16G3055 Fragaria x ananassa HOM05D001579 ORTHO05D002313 1.2e-07 60.1 44 65.9
Gohir.D01G103900 Gossypium hirsutum HOM05D001579 ORTHO05D002313 1.2e-07 60.1 68 47.1
FAN15G3423 Fragaria x ananassa HOM05D001579 ORTHO05D002313 3.5e-07 58.5 33 81.8
SMO169G0293 Selaginella moellendorffii HOM05D001579 ORTHO05D002313 1.7e-06 56.2 38 68.4


User provided reference genes

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