Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.0e-229 799.7 392 100.0
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.3e-136 489.6 358 67.3
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 7.3e-135 484.6 357 66.7
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 9.9e-132 474.2 391 61.6
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.0e-128 464.2 377 62.9
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 8.1e-118 427.9 369 57.2
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 1.5e-116 423.7 380 55.3
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 1.3e-115 420.6 373 56.3
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.6e-110 403.7 369 56.6
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.1e-109 401.0 370 54.6
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 2.4e-109 399.8 369 53.1
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 4.5e-108 395.6 392 51.5
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.3e-107 394.0 370 54.3
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 2.9e-107 392.9 380 52.6
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 6.5e-107 391.7 370 54.1
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 6.5e-107 391.7 331 54.7
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 1.1e-106 391.0 368 51.9
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 7.2e-106 388.3 344 53.2
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.7e-105 386.3 367 52.3
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 3.6e-105 386.0 370 51.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 6.1e-105 385.2 327 54.4
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 3.0e-104 382.9 372 53.5
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 4.3e-103 379.0 370 51.6
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.7e-103 378.6 380 50.8
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 2.6e-100 369.8 369 52.6
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.4e-100 369.4 381 49.9
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 5.9e-100 368.6 340 53.2
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.0e-99 367.9 349 50.7
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.9e-99 366.3 339 52.2
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 5.0e-99 365.5 351 51.9
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 8.5e-99 364.8 369 52.8
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.4e-98 364.0 368 49.7
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.4e-98 364.0 447 44.5
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.5e-98 363.2 323 52.9
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 3.2e-98 362.8 379 49.6
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 7.2e-98 361.7 350 50.9
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 6.1e-97 358.6 368 49.7
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 6.7e-96 355.1 343 49.6
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.5e-95 354.0 347 52.7
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 2.0e-95 353.6 343 51.9
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 2.6e-95 353.2 371 50.4
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 2.6e-95 353.2 377 47.7
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 3.3e-95 352.8 370 49.5
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 4.4e-95 352.4 367 48.0
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 5.7e-95 352.1 336 52.4
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 5.7e-95 352.1 346 51.7
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 4.8e-94 349.0 394 46.4
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 6.3e-94 348.6 368 50.3
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.8e-93 347.1 371 46.6
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 4.1e-93 345.9 377 47.7
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 5.3e-93 345.5 374 47.1
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 5.3e-93 345.5 368 48.4
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 6.9e-93 345.1 346 50.0
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 9.1e-93 344.7 363 46.8
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 1.2e-92 344.4 369 46.3
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 5.0e-91 339.0 371 47.4
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 5.0e-91 339.0 328 50.3
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 8.5e-91 338.2 371 46.6
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.9e-90 337.0 369 45.8
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 2.5e-90 336.7 370 47.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 4.2e-90 335.9 369 45.3
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 1.2e-89 334.3 372 46.2
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.2e-89 334.3 371 46.9
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 4.7e-89 332.4 343 48.7
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 6.1e-89 332.0 371 47.2
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.0e-88 331.3 371 46.4
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.8e-88 330.5 350 47.7
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 3.0e-88 329.7 371 46.6
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 5.2e-88 328.9 366 47.8
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 5.2e-88 328.9 349 47.9
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-87 327.8 366 48.4
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-87 327.8 272 55.9
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.7e-86 323.9 376 45.7
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.8e-86 322.4 342 48.5
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 6.3e-86 322.0 329 46.5
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 1.4e-85 320.9 381 46.2
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 1.3e-83 314.3 391 46.0
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 3.8e-83 312.8 373 44.0
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 6.5e-83 312.0 369 46.1
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.2e-82 309.7 368 44.8
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 5.5e-82 308.9 374 44.9
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 8.8e-80 301.6 336 44.3
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 3.7e-78 296.2 350 43.4
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.2e-76 291.2 353 45.0
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 2.2e-75 287.0 455 36.3
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 2.1e-73 280.4 331 43.2
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 1.3e-70 271.2 328 43.0
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 5.4e-69 265.8 258 48.1
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 1.2e-68 264.6 360 38.6
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 8.0e-65 251.9 416 38.5
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 1.4e-64 251.1 219 55.7
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 4.1e-61 239.6 284 43.0
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 9.2e-61 238.4 258 47.3
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.6e-55 220.3 282 41.8
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 3.4e-55 219.9 361 36.0
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 5.7e-55 219.2 162 61.7
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 9.2e-53 211.8 182 54.4
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 5.6e-50 202.6 315 33.7
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.6e-49 199.9 299 39.8
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 6.8e-48 195.7 175 52.6
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.9e-48 195.3 252 42.1
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 3.4e-47 193.4 252 40.5
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.5e-42 177.2 167 52.1
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 4.3e-34 149.8 225 39.1
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.3e-34 149.1 344 31.7
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 8.1e-33 145.6 246 32.1
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 5.8e-31 139.4 100 67.0
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 2.1e-25 120.9 174 39.1
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 8.1e-25 119.0 132 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 1.2e-23 115.2 205 31.7
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.5e-23 114.8 126 45.2
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.4e-22 109.0 254 31.1
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 6.0e-20 102.8 316 26.9
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 9.6e-18 95.5 99 46.5
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 1.2e-15 88.6 123 37.4
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.7e-12 77.4 86 40.7
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.9e-11 73.6 74 43.2
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 1.5e-10 71.6 100 38.0
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.5e-10 71.6 71 42.3
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.1e-09 67.8 100 43.0
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.8e-09 66.6 100 42.0
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.1e-09 65.9 100 42.0
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.1e-09 65.9 100 42.0
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 8.4e-06 55.8 42 57.1


User provided reference genes

Program Settings