Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.5e-264 914.4 477 100.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.7e-162 576.6 490 65.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.3e-153 545.4 530 61.1
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.7e-147 526.2 484 64.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.3e-137 491.5 484 60.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 4.4e-134 482.3 498 57.0
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.2e-133 479.9 487 56.9
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 3.8e-133 479.2 484 56.2
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.9e-133 478.8 489 56.0
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.3e-130 470.7 489 54.6
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 8.6e-130 468.0 485 54.6
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.5e-129 466.5 492 54.7
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 3.3e-129 466.1 492 54.5
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.6e-129 464.5 493 55.8
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.8e-127 460.3 489 54.8
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.4e-127 459.9 528 54.9
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 6.4e-125 451.8 512 52.5
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 9.3e-124 448.0 504 53.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.6e-123 447.2 504 53.4
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.7e-123 446.4 493 52.9
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.7e-123 446.4 490 52.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.6e-123 445.7 500 54.0
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.7e-122 443.7 485 53.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.3e-122 443.4 493 53.1
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.5e-121 439.9 495 53.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.3e-121 439.1 493 54.6
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.6e-121 438.7 501 52.9
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-120 437.2 492 52.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.6e-120 437.2 509 53.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 6.2e-120 435.3 526 51.5
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 6.2e-120 435.3 526 51.5
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.4e-119 434.1 503 52.9
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.8e-119 433.7 486 53.1
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.4e-119 433.3 489 52.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 4.0e-119 432.6 492 53.3
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.5e-118 430.6 503 50.9
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 4.5e-118 429.1 488 52.7
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.5e-118 429.1 504 52.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.3e-117 427.6 487 52.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.7e-117 427.2 493 50.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 2.9e-117 426.4 495 53.1
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 4.9e-117 425.6 526 49.0
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 8.4e-117 424.9 504 51.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.9e-116 423.7 484 52.9
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.4e-116 423.3 486 52.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.4e-116 423.3 486 52.7
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.5e-115 419.5 482 49.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 7.9e-115 418.3 485 52.0
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.0e-114 417.9 488 51.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.0e-114 417.9 482 52.5
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.9e-114 416.0 508 49.8
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 3.9e-114 416.0 510 49.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.9e-113 413.7 483 52.0
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.5e-113 413.3 483 51.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.5e-113 413.3 514 49.8
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.3e-113 412.5 531 48.2
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 5.6e-113 412.1 493 50.9
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.6e-112 410.6 494 53.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.8e-112 409.8 493 50.5
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 8.1e-112 408.3 493 52.5
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 4.0e-111 406.0 490 49.4
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 4.0e-111 406.0 488 50.4
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.2e-110 404.4 492 53.3
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 7.6e-110 401.7 516 48.6
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.3e-109 401.0 484 50.2
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.2e-109 400.2 483 49.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.4e-108 397.5 516 47.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 4.2e-108 396.0 491 51.5
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 5.5e-108 395.6 493 49.1
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 9.3e-108 394.8 491 50.5
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.2e-107 394.4 484 50.0
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.5e-107 392.9 490 50.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.9e-106 389.4 487 49.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 5.1e-106 389.0 491 50.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.1e-106 389.0 491 50.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.1e-106 389.0 491 50.5
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.9e-105 387.1 461 50.3
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.6e-105 384.8 414 52.2
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.6e-105 384.8 414 52.2
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 6.2e-104 382.1 350 60.6
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.2e-104 382.1 489 48.1
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.4e-103 380.9 469 49.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 4.0e-103 379.4 488 46.7
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.5e-102 377.5 489 48.7
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.4e-102 376.3 492 45.7
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 5.8e-102 375.6 495 45.1
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.8e-101 372.9 494 47.4
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 6.5e-101 372.1 415 51.6
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-99 367.9 478 46.9
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.6e-99 367.5 479 45.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 3.5e-99 366.3 410 52.7
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 4.6e-99 365.9 416 54.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.3e-97 359.4 373 55.2
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 9.6e-97 358.2 485 45.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.0e-93 348.2 487 45.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.3e-93 347.8 485 44.5
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 8.5e-93 345.1 492 45.5
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.4e-92 344.4 562 42.3
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.7e-91 340.1 510 46.9
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.7e-90 335.5 477 45.1
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.0e-85 319.3 482 43.2
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.9e-84 317.4 479 44.3
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-80 304.7 469 43.3
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.8e-80 303.5 496 42.7
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.1e-79 300.1 479 41.1
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.1e-79 299.7 453 42.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.0e-77 295.0 482 41.7
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.9e-77 293.5 484 42.8
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.5e-76 290.4 332 53.0
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.2e-75 288.1 435 43.2
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.3e-73 280.0 488 40.8
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.6e-70 271.2 410 44.4
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.5e-70 269.6 353 46.2
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 3.2e-68 263.5 499 38.1
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 4.2e-68 263.1 500 37.2
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.3e-65 253.4 477 40.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.7e-64 250.0 503 35.4
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.0e-62 244.2 449 38.5
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 7.2e-60 235.7 500 34.4
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.0e-58 230.3 374 40.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.0e-58 229.9 734 30.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 2.4e-55 220.7 427 36.1
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.1e-51 206.1 223 52.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 6.1e-51 206.1 208 54.8
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.7e-48 196.8 343 42.0
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.3e-44 183.3 207 51.2
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 3.6e-43 180.3 664 29.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.2e-40 171.0 217 47.5
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 2.3e-37 161.0 403 31.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 2.5e-36 157.5 363 32.5
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.2e-33 148.7 609 26.1
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 4.1e-31 140.2 608 25.7
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 7.0e-31 139.4 211 41.7
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.6e-27 127.1 210 41.9
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 6.8e-26 122.9 211 39.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.9e-24 117.5 202 38.6
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 2.1e-22 111.3 402 27.9
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.6e-22 110.2 216 36.6
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 7.8e-22 109.4 204 38.2
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 6.6e-21 106.3 83 60.2
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.9e-20 104.8 138 43.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 2.5e-20 104.4 209 37.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 4.3e-20 103.6 563 24.9
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 9.5e-20 102.4 148 42.6
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.2e-19 102.1 215 35.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.6e-19 101.7 193 36.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 4.7e-19 100.1 97 53.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.4e-18 97.8 214 32.2
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.0e-18 97.1 130 51.5
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.6e-17 94.4 74 56.8
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 5.8e-17 93.2 305 28.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 5.1e-13 80.1 175 36.6
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.9e-12 78.2 117 43.6
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.8e-11 74.3 120 45.0
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-09 68.9 119 45.4
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.2e-08 64.7 80 46.2
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.9e-07 61.6 124 31.5
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 3.2e-07 60.8 124 31.5
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 3.2e-07 60.8 124 31.5
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 3.2e-07 60.8 124 31.5
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 3.2e-07 60.8 124 31.5
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 3.2e-07 60.8 124 31.5
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 4.2e-07 60.5 124 30.6
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 4.2e-07 60.5 124 31.5
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 4.2e-07 60.5 124 30.6
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 4.2e-07 60.5 124 31.5
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 4.2e-07 60.5 125 30.4
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 5.4e-07 60.1 124 31.5
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 9.3e-07 59.3 125 32.0
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 1.2e-06 58.9 142 29.6
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 1.2e-06 58.9 163 28.8
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 1.6e-06 58.5 81 39.5
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 1.6e-06 58.5 153 30.1
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.1e-06 58.2 101 35.6
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 2.1e-06 58.2 66 40.9
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 2.7e-06 57.8 169 27.8
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 3.5e-06 57.4 124 30.6
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 4.6e-06 57.0 93 39.8
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 4.6e-06 57.0 134 27.6
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 6.0e-06 56.6 120 29.2
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 6.0e-06 56.6 279 24.0
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 6.0e-06 56.6 171 29.8
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 6.0e-06 56.6 171 29.8
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 7.8e-06 56.2 171 29.8


User provided reference genes

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