Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 1.1e-150 536.6 267 100.0
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.9e-98 362.5 259 67.6
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 4.1e-97 358.6 257 71.2
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 7.8e-96 354.4 259 66.4
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.3e-95 353.6 263 65.8
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 2.3e-95 352.8 264 66.3
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 1.9e-94 349.7 263 65.8
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 3.3e-94 349.0 262 64.9
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 7.3e-94 347.8 243 69.1
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.8e-93 345.9 262 65.3
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 4.7e-93 345.1 267 64.8
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 6.2e-93 344.7 231 70.1
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 8.1e-93 344.4 263 62.7
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.8e-92 343.2 241 71.0
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 4.0e-92 342.0 267 64.0
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 5.2e-92 341.7 213 74.2
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 6.8e-92 341.3 261 63.2
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 6.8e-92 341.3 241 70.5
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.2e-91 340.5 263 64.6
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.0e-91 339.7 261 64.0
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 2.6e-91 339.3 267 59.6
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.6e-91 339.3 267 63.3
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 2.6e-91 339.3 261 62.8
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 4.4e-91 338.6 264 63.6
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 5.8e-91 338.2 263 65.0
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 9.9e-91 337.4 264 65.2
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.7e-90 335.5 231 67.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.4e-89 333.6 263 62.7
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 2.4e-89 332.8 261 63.6
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 4.1e-89 332.0 242 68.6
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 5.4e-89 331.6 261 63.2
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 9.2e-89 330.9 231 68.4
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 9.2e-89 330.9 263 62.0
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 9.2e-89 330.9 268 61.9
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.6e-88 330.1 262 64.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.0e-87 325.9 219 68.5
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 8.6e-87 324.3 265 59.2
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.5e-86 323.6 219 68.0
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.5e-86 323.6 261 60.9
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 9.6e-86 320.9 262 60.3
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 9.6e-86 320.9 294 56.5
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 1.2e-85 320.5 253 61.7
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 2.8e-85 319.3 217 68.7
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.8e-85 319.3 285 56.8
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 6.2e-85 318.2 262 59.5
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 6.2e-85 318.2 248 63.3
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 6.2e-85 318.2 214 69.6
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.1e-84 317.4 219 67.6
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.4e-84 317.0 262 59.2
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 3.1e-84 315.8 262 61.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 5.2e-84 315.1 235 66.4
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 6.8e-84 314.7 217 68.7
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.2e-83 313.9 300 57.3
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.2e-83 313.9 277 59.6
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.2e-83 313.9 247 62.8
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 2.0e-83 313.2 266 58.3
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 4.4e-83 312.0 201 73.1
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 5.8e-83 311.6 247 62.8
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 9.9e-83 310.8 279 58.1
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 4.9e-82 308.5 199 71.9
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 6.4e-82 308.1 247 61.9
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 6.4e-82 308.1 247 61.9
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 6.4e-82 308.1 304 52.6
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 8.4e-82 307.8 247 61.9
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 5.4e-81 305.1 249 63.5
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 5.4e-81 305.1 262 60.3
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 5.4e-81 305.1 214 66.8
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.1e-80 303.1 327 49.5
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.5e-80 302.4 196 70.9
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 4.6e-80 302.0 338 48.5
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 6.0e-80 301.6 250 62.8
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 3.9e-79 298.9 261 57.9
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 3.9e-79 298.9 252 61.5
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 3.9e-79 298.9 214 66.4
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 6.6e-79 298.1 254 59.8
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 3.3e-78 295.8 254 59.4
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 4.3e-78 295.4 252 61.9
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 4.3e-78 295.4 267 58.4
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.3e-77 293.9 227 63.4
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 4.8e-77 292.0 239 59.8
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 1.4e-76 290.4 254 59.4
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 1.4e-76 290.4 254 59.4
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.8e-76 290.0 257 59.1
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 4.0e-76 288.9 257 58.8
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 5.3e-76 288.5 251 59.8
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 9.0e-76 287.7 226 63.7
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.5e-75 287.0 250 60.4
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 1.5e-75 287.0 254 59.4
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 4.4e-75 285.4 256 57.4
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 4.4e-75 285.4 239 60.3
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 7.6e-75 284.6 257 58.8
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 4.2e-73 278.9 193 67.9
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.2e-72 277.3 261 52.5
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 2.7e-72 276.2 221 62.0
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 6.0e-72 275.0 193 65.8
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 1.3e-71 273.9 221 61.1
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.7e-71 273.5 225 59.1
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 3.0e-71 272.7 253 58.9
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 3.9e-71 272.3 194 64.4
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 8.7e-71 271.2 195 63.6
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 5.6e-70 268.5 194 63.4
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 6.2e-69 265.0 221 56.1
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 5.3e-68 261.9 164 73.2
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 9.0e-68 261.2 261 50.6
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 3.8e-66 255.8 233 54.9
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 6.4e-66 255.0 252 55.2
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 7.9e-64 248.1 219 55.3
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.9e-62 243.4 259 49.4
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 3.7e-61 239.2 236 50.8
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.5e-57 226.5 261 47.9
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 3.7e-53 212.6 264 46.6
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.7e-40 169.9 189 43.9
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 3.9e-39 166.0 120 63.3
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 7.4e-38 161.8 207 37.7
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 5.1e-31 139.0 162 39.5
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.2e-25 119.4 193 33.7
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 5.2e-23 112.5 121 52.1
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 1.8e-15 87.4 118 45.8


User provided reference genes

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