Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 3.7e-280 967.6 510 100.0
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 89.0
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.7e-253 879.0 510 88.6
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 6.6e-253 877.1 511 88.6
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 8.9e-250 866.7 511 87.7
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 87.1
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.9e-248 861.7 510 86.1
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 2.4e-247 858.6 511 86.7
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 86.3
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 9.2e-247 856.7 511 86.9
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 85.7
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 1.2e-246 856.3 511 86.7
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 2.7e-246 855.1 511 86.5
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 2.7e-246 855.1 510 86.5
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 4.6e-246 854.4 510 85.9
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 7.8e-246 853.6 510 86.5
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.0e-245 853.2 511 85.5
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 1.0e-245 853.2 512 85.9
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.0e-245 853.2 510 85.7
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.3e-245 852.0 513 86.0
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.7
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 2.3e-245 852.0 512 85.9
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 3.9e-245 851.3 511 85.3
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 6.6e-245 850.5 511 85.7
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 6.6e-245 850.5 511 84.9
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.1e-244 849.7 511 85.3
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.5e-244 849.4 512 85.9
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.5e-244 849.4 511 85.5
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 1.5e-244 849.4 512 86.1
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 1.5e-244 849.4 511 85.5
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.9e-244 849.0 511 85.1
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.5e-244 848.6 512 86.3
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 2.5e-244 848.6 511 86.3
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 3.3e-244 848.2 512 85.4
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 5.6e-244 847.4 511 84.7
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 5.6e-244 847.4 511 85.1
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 7.3e-244 847.0 511 84.0
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 7.3e-244 847.0 512 86.1
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 7.3e-244 847.0 511 85.9
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 9.6e-244 846.7 511 85.3
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.2e-243 846.3 511 85.3
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 85.7
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.6e-243 845.9 511 85.1
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.6e-243 845.9 511 85.3
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 2.1e-243 845.5 511 85.1
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 2.8e-243 845.1 511 84.7
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 2.8e-243 845.1 511 86.3
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.6e-243 844.7 510 85.1
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 3.6e-243 844.7 511 84.7
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 3.6e-243 844.7 510 84.9
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 6.2e-243 844.0 550 80.7
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 8.1e-243 843.6 511 84.5
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.4e-242 842.8 511 84.5
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.4e-242 842.8 511 85.7
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.8e-242 842.4 511 85.7
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.8e-242 842.4 511 84.7
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 2.4e-242 842.0 512 84.8
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.4e-242 842.0 511 84.5
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 85.1
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 84.7
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 84.7
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 84.7
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 8.9e-242 840.1 511 84.7
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.2e-241 839.7 511 84.7
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 1.2e-241 839.7 511 84.3
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 2.0e-241 839.0 510 84.3
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.6e-241 838.6 511 84.7
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.6e-241 838.6 511 84.7
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 3.4e-241 838.2 511 83.8
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 4.4e-241 837.8 511 83.8
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 85.5
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 83.9
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 5.8e-241 837.4 511 84.1
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 5.8e-241 837.4 511 84.1
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 7.6e-241 837.0 511 84.5
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 9.9e-241 836.6 510 84.5
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.3e-240 836.3 511 83.8
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 3.8e-240 834.7 511 84.1
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 4.9e-240 834.3 511 84.5
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 6.4e-240 833.9 511 83.6
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 8.4e-240 833.6 511 83.4
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.9e-239 832.4 510 83.1
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.9e-239 832.4 511 83.2
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 3.2e-239 831.6 510 83.7
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 7.1e-239 830.5 511 83.4
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.2e-238 829.7 511 83.2
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.6e-238 829.3 511 83.2
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 2.7e-238 828.6 527 81.8
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 2.7e-238 828.6 510 83.3
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.5e-238 828.2 510 83.5
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.3e-237 825.5 512 83.2
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 6.6e-237 823.9 511 82.8
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 6.6e-237 823.9 506 85.4
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 1.1e-236 823.2 511 83.0
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.5e-236 822.8 511 82.8
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.5e-236 822.8 511 82.6
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.9e-236 822.4 511 82.8
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 4.3e-236 821.2 511 82.6
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 9.6e-236 820.1 503 84.5
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 2.1e-235 818.9 511 82.4
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 2.1e-235 818.9 511 82.0
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 2.8e-235 818.5 512 82.0
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 1.5e-233 812.8 511 80.8
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.9e-232 807.7 494 84.4
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 1.1e-231 806.6 512 80.3
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.4e-231 806.2 525 81.0
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.9e-231 805.8 511 82.4
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 2.1e-230 802.4 494 84.4
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.9e-229 798.1 511 80.2
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-228 796.2 511 80.6
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-228 796.2 511 80.6
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 1.9e-228 795.8 511 80.4
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 2.5e-228 795.4 511 80.0
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 4.3e-228 794.7 511 80.4
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 1.6e-227 792.7 495 82.6
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.6e-227 792.7 495 82.6
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.2e-225 786.6 493 81.1
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.5e-225 786.2 510 77.5
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 5.8e-225 784.3 494 82.4
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 9.9e-225 783.5 473 85.8
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 2.2e-224 782.3 557 75.8
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 3.5e-222 775.0 548 75.9
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 4.6e-222 774.6 510 76.5
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 1.3e-219 766.5 512 78.1
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 1.1e-218 763.5 510 78.2
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.2e-216 755.7 525 77.3
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.2e-216 755.7 525 77.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 9.3e-215 750.4 510 76.7
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.1e-204 716.8 442 83.5
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 2.5e-199 699.1 473 78.6
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 6.1e-198 694.5 512 73.2
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 6.3e-195 684.5 414 85.5
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 6.9e-194 681.0 504 72.6
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 3.2e-191 672.2 514 65.4
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.7e-188 661.4 510 69.8
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.0e-186 654.4 505 67.3
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 1.2e-182 643.7 365 91.2
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.7e-176 623.2 469 71.4
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 5.5e-175 618.2 514 59.7
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 7.2e-175 617.8 376 84.8
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 9.1e-170 600.9 379 81.8
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 5.5e-167 591.7 347 88.8
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.8e-166 589.3 494 60.1
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 1.5e-164 583.6 365 83.3
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 5.7e-164 581.6 510 59.2
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 1.7e-163 580.1 522 58.6
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 4.5e-161 572.0 505 63.8
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 5.0e-152 542.0 499 54.1
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 6.6e-152 541.6 325 85.8
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.0e-144 517.7 457 64.6
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 2.0e-140 503.4 307 84.7
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.5e-137 492.7 284 89.1
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 6.8e-133 478.4 383 63.2
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 1.3e-118 431.0 509 47.2
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.5e-116 422.5 255 85.5
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.8e-109 400.6 245 84.1
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 7.1e-106 388.7 484 45.0
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.6e-105 387.5 386 54.1
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 3.0e-104 383.3 267 74.2
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 2.7e-97 360.1 519 38.2
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.2e-81 308.1 200 83.5
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.7e-71 271.9 343 46.1
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 4.1e-61 240.0 503 36.4
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 4.0e-56 223.4 365 41.1
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.8e-56 222.6 311 43.4
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.2e-55 221.9 144 79.2
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 4.4e-47 193.4 117 81.2
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-45 188.7 206 52.4
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 4.1e-45 186.8 143 72.0
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.5e-42 177.6 197 51.3
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.5e-34 151.0 106 75.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.9e-30 137.5 119 56.3
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 5.6e-26 123.2 82 78.0
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 3.7e-22 110.5 121 58.7
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.9e-10 71.6 63 58.7
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 3.1e-08 64.3 37 81.1
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 3.1e-08 64.3 85 50.6
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 3.8e-06 57.4 38 73.7


User provided reference genes

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