Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14263 Selenicereus undatus HOM05D003118 ORTHO05D003618 3.2e-93 345.1 179 100.0
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 1.9e-37 159.8 156 59.6
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 2.7e-36 156.0 175 53.7
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 1.1e-34 150.6 146 54.1
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 2.0e-34 149.8 146 54.1
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 2.6e-34 149.4 148 55.4
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 4.4e-34 148.7 146 54.8
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 4.4e-34 148.7 146 54.8
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 4.4e-34 148.7 146 54.8
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 7.4e-34 147.9 147 57.1
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 1.1e-32 144.1 148 52.7
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 2.4e-32 142.9 146 56.2
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 2.4e-32 142.9 145 55.9
QL02p033293 Quercus lobata HOM05D003118 ORTHO05D003618 3.1e-32 142.5 146 54.8
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 4.1e-32 142.1 146 54.8
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 2.0e-31 139.8 126 60.3
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 3.5e-31 139.0 146 50.0
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 4.5e-31 138.7 150 52.0
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 2.2e-30 136.3 148 54.1
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 6.5e-30 134.8 146 53.4
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 8.5e-30 134.4 146 52.1
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 7.2e-29 131.3 156 50.0
GSVIVG01019423001 Vitis vinifera HOM05D003118 ORTHO05D003618 9.4e-29 131.0 161 46.0
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 1.2e-28 130.6 146 50.0
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 1.2e-28 130.6 146 51.4
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 1.6e-28 130.2 147 51.0
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 6.1e-28 128.3 146 50.0
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 6.1e-28 128.3 146 49.3
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 8.0e-28 127.9 150 50.0
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 1.0e-27 127.5 151 47.0
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 1.4e-27 127.1 122 59.0
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 1.4e-27 127.1 146 49.3
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.4e-27 127.1 146 49.3
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.4e-27 127.1 146 49.3
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.4e-27 127.1 146 49.3
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 2.3e-27 126.3 144 49.3
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.0e-27 125.9 146 49.3
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 3.9e-27 125.6 157 47.1
SHI07074 Sapria himalayana HOM05D003118 ORTHO05D003618 3.9e-27 125.6 146 47.3
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 6.7e-27 124.8 174 46.0
GSVIVG01026973001 Vitis vinifera HOM05D003118 ORTHO05D003618 1.1e-26 124.0 158 49.4
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 3.3e-26 122.5 158 44.3
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 5.7e-26 121.7 149 50.3
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 7.4e-26 121.3 145 45.5
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 7.4e-26 121.3 148 45.3
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 9.7e-26 120.9 146 43.2
LjContig00312_ERROPOS870357g0013212 Lotus japonicus HOM05D003118 ORTHO05D003618 1.7e-25 120.2 151 43.7
Medtr8g447390 Medicago truncatula HOM05D003118 ORTHO05D003618 1.7e-25 120.2 147 47.6
Sopen08g003990 Solanum pennellii HOM05D003118 ORTHO05D003618 1.7e-25 120.2 148 48.0
FAN18G3666 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.2e-25 119.8 123 54.5
Nitab4.5_0005339g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 2.8e-25 119.4 148 49.3
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 4.8e-25 118.6 168 42.9
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 4.8e-25 118.6 146 43.8
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 4.8e-25 118.6 152 41.4
Nitab4.5_0002231g0040 Nicotiana tabacum HOM05D003118 ORTHO05D003618 6.3e-25 118.2 148 48.6
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 8.2e-25 117.9 146 43.8
Solyc08g008130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 1.1e-24 117.5 148 48.6
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 1.4e-24 117.1 147 46.9
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 1.4e-24 117.1 157 44.6
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 1.8e-24 116.7 152 46.1
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 4.1e-24 115.5 156 43.6
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 5.3e-24 115.2 146 44.5
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 7.0e-24 114.8 155 42.6
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 7.0e-24 114.8 146 43.8
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 7.0e-24 114.8 156 44.2
GSVIVG01026971001 Vitis vinifera HOM05D003118 ORTHO05D003618 9.1e-24 114.4 143 48.3
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 1.6e-23 113.6 157 40.1
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 2.0e-23 113.2 154 44.2
BolC6t37186H Brassica oleracea HOM05D003118 ORTHO05D003618 5.9e-23 111.7 155 38.1
PSO170G3062 Papaver somniferum HOM05D003118 ORTHO05D003618 5.9e-23 111.7 151 43.7
PSO063G6388 Papaver somniferum HOM05D003118 ORTHO05D003618 7.7e-23 111.3 151 43.7
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 7.7e-23 111.3 153 43.8
ECA246G2781 Erigeron canadensis HOM05D003118 ORTHO05D003618 1.0e-22 110.9 152 42.8
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 1.0e-22 110.9 146 42.5
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 1.3e-22 110.5 148 43.9
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 1.7e-22 110.2 126 48.4
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 1.7e-22 110.2 130 42.3
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 2.9e-22 109.4 146 39.7
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 5.0e-22 108.6 152 42.8
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 5.0e-22 108.6 176 40.9
Carub.0007s3389 Capsella rubella HOM05D003118 ORTHO05D003618 8.5e-22 107.8 167 37.1
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 8.5e-22 107.8 139 45.3
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 4.2e-21 105.5 147 40.1
Thhalv10027658m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 4.2e-21 105.5 148 39.9
Sp7g00460 Schrenkiella parvula HOM05D003118 ORTHO05D003618 5.5e-21 105.1 149 40.3
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 9.4e-21 104.4 147 43.5
CsaV3_5G002370 Cucumis sativus L. HOM05D003118 ORTHO05D003618 9.4e-21 104.4 147 40.8
ECA240G3271 Erigeron canadensis HOM05D000115 ORTHO05D003618 9.4e-21 104.4 148 42.6
CiPaw.01G067900 Carya illinoinensis HOM05D003118 ORTHO05D003618 1.2e-20 104.0 137 46.0
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.2e-20 104.0 156 38.5
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 1.6e-20 103.6 147 39.5
BcaC08g44538 Brassica carinata HOM05D003118 ORTHO05D003618 2.1e-20 103.2 151 37.1
C06p20020 Brassica napus HOM05D003118 ORTHO05D003618 2.1e-20 103.2 151 37.1
A07p20860 Brassica napus HOM05D003118 ORTHO05D003618 2.7e-20 102.8 125 40.0
BraA07t29773Z Brassica rapa HOM05D003118 ORTHO05D003618 2.7e-20 102.8 125 40.0
BcaB02g07884 Brassica carinata HOM05D003118 ORTHO05D003618 3.6e-20 102.4 143 39.2
Nitab4.5_0010695g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 3.6e-20 102.4 144 43.1
AL7G47820 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 4.7e-20 102.1 156 36.5
Sed0003885 Sechium edule HOM05D003118 ORTHO05D003618 4.7e-20 102.1 146 41.1
BraA04t17109Z Brassica rapa HOM05D003118 ORTHO05D003618 6.1e-20 101.7 127 40.2
A04p14690 Brassica napus HOM05D003118 ORTHO05D003618 8.0e-20 101.3 127 40.2
CANSAT21G0202 Cannabis sativa HOM05D003118 ORTHO05D003618 8.0e-20 101.3 150 41.3
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 1.0e-19 100.9 154 37.7
AT5G41580 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 1.4e-19 100.5 156 36.5
Nitab4.5_0000915g0080 Nicotiana tabacum HOM05D003118 ORTHO05D003618 1.4e-19 100.5 142 41.5
BcaC02g08950 Brassica carinata HOM05D003118 ORTHO05D003618 1.8e-19 100.1 127 40.9
C04p48560 Brassica napus HOM05D003118 ORTHO05D003618 1.8e-19 100.1 127 40.9
BolC4t26449H Brassica oleracea HOM05D003118 ORTHO05D003618 1.8e-19 100.1 127 40.9
Peaxi162Scf00020g01526 Petunia axillaris HOM05D003118 ORTHO05D003618 1.8e-19 100.1 139 43.2
THA.LOC104809363 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 1.8e-19 100.1 130 40.8
MELO3C005717.2 Cucumis melo HOM05D003118 ORTHO05D003618 3.0e-19 99.4 176 35.2
Solyc01g095130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 3.0e-19 99.4 144 39.6
QL04p055623 Quercus lobata HOM05D003118 ORTHO05D003618 6.8e-19 98.2 145 43.4
BcaB06g27629 Brassica carinata HOM05D003118 ORTHO05D003618 1.5e-18 97.1 135 37.8
Sopen01g038920 Solanum pennellii HOM05D003118 ORTHO05D003618 2.6e-18 96.3 142 38.0
CiPaw.12G088800 Carya illinoinensis HOM05D003118 ORTHO05D003618 3.4e-18 95.9 146 42.5
CARHR287630 Cardamine hirsuta HOM05D003118 ORTHO05D003618 4.4e-18 95.5 137 37.2
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 4.4e-18 95.5 85 60.0
Eucgr.E00782 Eucalyptus grandis HOM05D003118 ORTHO05D003618 1.7e-17 93.6 118 46.6
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 2.2e-17 93.2 109 47.7
TPR.G24280 Trifolium pratense HOM05D003118 ORTHO05D003618 2.8e-17 92.8 141 39.0
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 3.7e-17 92.4 109 46.8
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 3.7e-17 92.4 149 38.3
THA.LOC104823601 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 3.7e-17 92.4 91 50.5
Cpa.g.sc201.12 Carica papaya HOM05D003118 ORTHO05D003618 4.8e-17 92.0 171 36.3
Aa31LG9G490 Aethionema arabicum HOM05D003118 ORTHO05D003618 6.3e-17 91.7 129 34.1
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 6.3e-17 91.7 107 46.7
PSO266G0003 Papaver somniferum HOM05D003118 ORTHO05D003618 6.3e-17 91.7 155 37.4
HanXRQChr13g0416081 Helianthus annuus HOM05D003118 ORTHO05D003618 1.4e-16 90.5 126 38.1
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 1.4e-16 90.5 123 39.8
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 3.1e-16 89.4 108 43.5
TPR.G24909 Trifolium pratense HOM05D003118 ORTHO05D003618 4.1e-16 89.0 134 42.5
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 1.6e-15 87.0 84 56.0
SEGI_33305 Sequoiadendron giganteum HOM05D003118 ORTHO05D003618 1.0e-14 84.3 97 45.4
Os06g0164000 Oryza sativa ssp. japonica HOM05D003118 ORTHO05D003618 2.2e-14 83.2 151 33.1
Cc02_g38610 Coffea canephora HOM05D003118 ORTHO05D003618 4.2e-13 79.0 97 42.3
HPP92_000528 Vanilla planifolia HOM05D003118 ORTHO05D003618 4.7e-12 75.5 150 36.0
BcaB03g13535 Brassica carinata HOM05D003118 ORTHO05D003618 3.0e-11 72.8 115 37.4
CDE10G1109 Ceratophyllum demersum HOM05D003118 ORTHO05D003618 5.2e-11 72.0 141 36.2
BraA08t35403Z Brassica rapa HOM05D003118 ORTHO05D003618 2.0e-10 70.1 116 37.1
A08p34920 Brassica napus HOM05D003118 ORTHO05D003618 2.6e-10 69.7 116 37.1
HPP92_002884 Vanilla planifolia HOM05D003118 ORTHO05D003618 9.8e-10 67.8 94 38.3
HPP92_002895 Vanilla planifolia HOM05D003118 ORTHO05D003618 1.3e-09 67.4 94 37.2
BolC8t48874H Brassica oleracea HOM05D003118 ORTHO05D003618 1.7e-09 67.0 116 37.9
AL1G19340 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 2.2e-09 66.6 120 33.3
AT1G08910 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 2.8e-09 66.2 93 38.7
Medtr7g063200 Medicago truncatula HOM05D003118 ORTHO05D003618 3.7e-09 65.9 132 29.5
CARHR008810 Cardamine hirsuta HOM05D003118 ORTHO05D003618 4.9e-09 65.5 94 39.4
Sp1g07530 Schrenkiella parvula HOM05D003118 ORTHO05D003618 1.1e-08 64.3 124 33.1
PGSC0003DMG400000196 Solanum tuberosum HOM05D003118 ORTHO05D003618 2.4e-08 63.2 139 32.4
C08p12330 Brassica napus HOM05D003118 ORTHO05D003618 3.1e-08 62.8 116 37.1
HanXRQChr04g0120811 Helianthus annuus HOM05D003118 ORTHO05D003618 4.1e-08 62.4 179 28.5
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 7.0e-08 61.6 77 46.8
SMO116G0096 Selaginella moellendorffii HOM05D003118 ORTHO05D003898 5.9e-07 58.5 103 30.1
Aa31sc17G150 Aethionema arabicum HOM05D003118 ORTHO05D003618 7.7e-07 58.2 92 40.2
BcaB07g34111 Brassica carinata HOM05D003118 ORTHO05D003618 7.7e-07 58.2 116 31.9
Sc01g0009900 Simmondsia chinensis HOM05D003118 ORTHO05D003618 7.7e-07 58.2 46 65.2
Lsat_1_v5_gn_7_2680 Lactuca sativa HOM05D003118 ORTHO05D003618 1.3e-06 57.4 125 31.2
PSO675G3142 Papaver somniferum HOM05D003118 ORTHO05D003618 6.6e-06 55.1 50 52.0


User provided reference genes

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