Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.5e-43 177.9 94 100.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.7e-19 98.6 80 71.2
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.7e-17 90.9 77 71.4
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.3e-16 89.7 77 67.5
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.3e-15 84.3 73 67.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.7e-13 79.3 85 58.8
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.2e-13 79.0 75 61.3
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.1e-12 76.6 78 62.8
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 2.5e-12 75.5 77 63.6
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.6e-11 72.8 74 62.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-11 72.8 83 56.6
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.1e-11 72.4 74 58.1
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-11 72.4 74 58.1
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.1e-11 72.4 81 61.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.7e-11 72.0 74 62.2
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.7e-11 72.0 74 56.8
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.7e-11 72.0 73 58.9
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.7e-11 72.0 76 56.6
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 6.1e-11 70.9 74 60.8
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.1e-11 70.9 73 58.9
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.1e-11 70.9 80 55.0
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 6.1e-11 70.9 76 57.9
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 7.9e-11 70.5 74 60.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 7.9e-11 70.5 78 55.1
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.0e-10 70.1 73 57.5
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.0e-10 70.1 79 54.4
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.0e-10 70.1 76 57.9
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-10 69.7 73 57.5
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.4e-10 69.7 78 53.8
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-10 69.7 80 55.0
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 3.0e-10 68.6 75 54.7
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.9e-10 68.2 76 60.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.9e-10 68.2 76 57.9
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.9e-10 68.2 74 60.8
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.9e-10 68.2 88 56.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.9e-10 68.2 77 57.1
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.9e-10 68.2 77 58.4
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 5.1e-10 67.8 76 60.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.1e-10 67.8 74 59.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.1e-10 67.8 74 59.5
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 6.7e-10 67.4 79 54.4
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 8.8e-10 67.0 76 59.2
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 8.8e-10 67.0 73 57.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 8.8e-10 67.0 73 57.5
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 8.8e-10 67.0 74 59.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-09 66.6 74 56.8
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.1e-09 66.6 77 57.1
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.0e-09 65.9 75 56.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 3.3e-09 65.1 87 50.6
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.3e-09 65.1 76 55.3
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.3e-09 64.7 74 58.1
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.7e-09 64.3 74 55.4
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 7.4e-09 63.9 82 48.8
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 7.4e-09 63.9 75 58.7
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 7.4e-09 63.9 78 56.4
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.4e-09 63.9 79 54.4
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 9.7e-09 63.5 77 58.4
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 9.7e-09 63.5 76 59.2
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 9.7e-09 63.5 76 59.2
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 9.7e-09 63.5 83 45.8
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.3e-08 63.2 76 53.9
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.7e-08 62.8 77 51.9
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.7e-08 62.8 77 51.9
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.7e-08 62.8 81 51.9
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.2e-08 62.4 73 50.7
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.2e-08 62.4 79 55.7
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.8e-08 62.0 73 54.8
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.8e-08 62.0 74 52.7
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.8e-08 62.0 88 47.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 3.7e-08 61.6 74 55.4
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.8e-08 61.2 77 51.9
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.8e-08 61.2 77 51.9
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.8e-08 61.2 74 55.4
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 6.3e-08 60.8 73 53.4
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 8.2e-08 60.5 78 50.0
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 8.2e-08 60.5 72 54.2
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 8.2e-08 60.5 75 53.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.4e-07 59.7 73 54.8
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-07 59.3 78 56.4
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-07 59.3 85 50.6
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.4e-07 58.9 80 51.2
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.4e-07 58.9 80 51.2
AUR62037857 Chenopodium quinoa HOM05D002207 ORTHO05D000519 2.4e-07 58.9 66 62.1
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 2.4e-07 58.9 73 54.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.1e-07 58.5 73 54.8
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 3.1e-07 58.5 71 54.9
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.1e-07 58.2 71 54.9
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 4.1e-07 58.2 71 54.9
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.1e-07 58.2 71 56.3
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.1e-07 58.2 71 56.3
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.1e-07 58.2 78 53.8
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.3e-07 57.8 85 49.4
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 6.9e-07 57.4 71 53.5
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 6.9e-07 57.4 71 53.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 6.9e-07 57.4 74 51.4
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 6.9e-07 57.4 75 48.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.9e-07 57.4 78 52.6
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.9e-07 57.4 85 49.4
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.2e-06 56.6 72 51.4
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.5e-06 56.2 71 53.5
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.5e-06 56.2 84 46.4
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.0e-06 55.8 71 52.1
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.0e-06 55.8 71 53.5
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.6e-06 55.5 77 53.2
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.6e-06 55.5 75 52.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.4e-06 55.1 75 53.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.5e-06 54.7 81 51.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.5e-06 54.7 73 49.3
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.5e-06 54.7 78 47.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.9e-06 54.3 81 51.9
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 5.9e-06 54.3 76 50.0
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.9e-06 54.3 87 52.9
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 5.9e-06 54.3 74 52.7
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 5.9e-06 54.3 76 52.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 5.9e-06 54.3 103 43.7
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 7.7e-06 53.9 86 50.0


User provided reference genes

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