Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.4e-105 384.4 203 100.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 6.2e-53 211.5 201 59.7
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.3e-50 203.8 202 59.4
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.1e-44 182.6 259 47.5
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.1e-40 169.9 199 54.3
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 4.6e-40 168.7 208 52.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.0e-40 168.3 207 52.7
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 6.0e-40 168.3 200 52.5
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.3e-39 167.2 208 52.4
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.0e-39 166.0 205 52.2
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.1e-39 165.2 204 51.0
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 5.1e-39 165.2 209 51.2
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 5.1e-39 165.2 204 50.0
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 6.7e-39 164.9 203 51.7
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 6.7e-39 164.9 206 54.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 6.7e-39 164.9 207 52.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 8.7e-39 164.5 207 53.1
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.3e-38 162.2 209 51.2
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.4e-38 161.4 210 50.5
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 7.4e-38 161.4 211 51.7
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.6e-38 161.0 211 50.2
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.3e-37 160.6 208 51.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 2.8e-37 159.5 201 50.7
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.8e-37 159.5 204 52.5
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.8e-37 158.7 203 50.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 6.2e-37 158.3 176 56.8
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 8.1e-37 157.9 192 51.6
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.1e-37 157.9 182 54.4
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.1e-36 157.5 207 50.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.1e-36 157.5 211 49.3
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.8e-36 156.8 202 52.0
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.4e-36 156.4 205 51.7
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 4.0e-36 155.6 192 51.6
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.0e-36 155.6 308 39.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 5.3e-36 155.2 139 62.6
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.3e-36 155.2 206 51.0
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.2e-35 154.1 200 50.5
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.6e-35 152.9 228 46.5
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.5e-35 152.1 204 50.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.3e-34 150.6 228 46.1
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.5e-34 148.3 205 50.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.5e-34 148.3 205 50.2
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 8.4e-34 147.9 179 54.7
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 8.4e-34 147.9 206 49.5
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-33 147.5 206 47.1
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.5e-33 146.4 198 48.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.5e-33 145.2 207 48.3
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 5.5e-33 145.2 245 41.6
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-32 144.1 207 47.8
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 2.1e-32 143.3 206 46.6
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.1e-32 143.3 198 46.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.7e-32 142.9 173 52.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 3.5e-32 142.5 208 49.5
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 4.6e-32 142.1 201 46.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 6.0e-32 141.7 205 46.8
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 7.9e-32 141.4 197 48.7
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.0e-31 141.0 213 46.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.0e-31 141.0 213 46.0
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.0e-31 141.0 205 48.3
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.3e-31 139.8 197 45.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.3e-31 139.8 175 52.0
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 2.3e-31 139.8 211 47.4
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 2.3e-31 139.8 248 40.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.0e-31 139.4 158 57.0
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 3.9e-31 139.0 189 50.3
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 3.9e-31 139.0 189 50.3
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.9e-31 139.0 172 53.5
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 6.7e-31 138.3 180 50.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.5e-30 137.1 191 47.1
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.5e-30 136.3 216 45.4
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 3.3e-30 136.0 197 50.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 3.3e-30 136.0 206 48.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 7.4e-30 134.8 210 48.6
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 7.4e-30 134.8 207 44.9
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 9.6e-30 134.4 207 47.3
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.6e-29 133.7 189 45.0
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 6.3e-29 131.7 120 63.3
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.2e-29 131.3 124 58.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-28 131.0 121 64.5
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-28 131.0 121 64.5
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.4e-28 129.8 192 47.4
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 6.9e-28 128.3 268 38.8
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 6.9e-28 128.3 268 38.8
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.5e-27 127.1 207 45.4
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 5.9e-27 125.2 300 35.0
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.9e-26 122.9 204 42.6
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.5e-26 121.7 208 40.9
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 8.4e-26 121.3 201 40.8
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.4e-25 120.6 203 41.9
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.4e-25 120.6 198 44.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.9e-25 120.2 193 45.1
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 3.2e-25 119.4 207 42.5
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.5e-25 118.6 121 60.3
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 7.2e-25 118.2 210 42.9
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.2e-24 117.5 121 57.0
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.6e-24 117.1 121 57.9
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.6e-24 117.1 203 41.4
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.1e-24 116.7 186 44.6
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.7e-24 116.3 121 57.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.5e-24 115.9 207 41.1
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 4.6e-24 115.5 153 47.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 6.1e-24 115.2 121 55.4
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.9e-24 114.8 212 39.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.3e-23 114.0 121 56.2
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.3e-23 113.2 213 41.3
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 3.9e-23 112.5 121 57.9
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.3e-21 107.5 256 33.2
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 4.8e-21 105.5 226 37.6
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 6.3e-21 105.1 198 39.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.1e-20 104.4 177 44.1
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.8e-20 103.6 197 40.6
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.3e-18 97.4 104 57.7
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 5.0e-18 95.5 172 46.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.1e-17 94.4 201 40.3
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.9e-17 93.6 123 50.4
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.2e-17 92.4 228 36.4
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.5e-17 92.0 119 47.9
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 5.5e-17 92.0 196 38.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.2e-17 91.7 198 39.9
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 9.4e-17 91.3 105 53.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.7e-16 89.7 197 41.1
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 4.6e-16 89.0 115 53.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.0e-15 87.8 121 47.9
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.0e-14 83.6 139 41.7
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 3.3e-14 82.8 208 37.5
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 9.7e-14 81.3 199 34.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.1e-12 76.3 109 47.7
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.1e-12 76.3 109 47.7
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.1e-12 76.3 109 47.7
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 9.1e-12 74.7 272 31.6
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.6e-11 73.2 121 43.0
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.9e-09 67.0 75 58.7
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.2e-09 66.2 58 56.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-08 63.9 120 37.5
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.1e-08 63.5 122 37.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.1e-08 62.0 120 36.7
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.0e-07 59.7 118 37.3
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 3.0e-07 59.7 60 53.3
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 2.6e-06 56.6 57 54.4


User provided reference genes

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