Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 6287.6 3174 100.0
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 3704.1 3249 59.5
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 3671.7 3205 60.3
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 3295.8 3128 56.4
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 3124.3 3216 53.4
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2646.7 3303 46.4
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2592.4 3259 45.7
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2552.7 3265 45.2
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2546.5 3246 44.7
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2524.6 3273 45.2
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2489.5 3256 44.9
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2479.1 3258 44.7
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2473.7 2991 46.8
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2467.6 3509 42.2
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2460.3 3314 43.8
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2454.5 3225 43.9
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2452.6 3258 44.1
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2447.9 3261 43.4
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2445.2 3249 44.4
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2429.8 3269 43.8
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2402.1 3304 43.1
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2390.9 3302 43.1
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2382.8 3256 43.4
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2378.2 3304 42.8
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2346.2 3267 43.3
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2340.8 3382 41.6
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2339.7 3281 42.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2335.5 3250 42.1
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2332.0 3247 41.8
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2331.2 3255 42.4
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2314.3 3244 43.2
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2302.3 3247 41.5
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2297.7 3900 37.7
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2296.2 3244 41.8
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2293.8 3242 41.9
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2283.1 3253 42.0
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2263.4 3274 42.1
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2258.8 3287 41.7
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2258.8 2953 44.8
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2256.9 3263 41.3
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2255.3 3284 41.4
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2226.4 3257 41.1
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2222.2 2879 45.3
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2217.2 3272 41.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2212.6 3357 40.6
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2194.5 3241 40.8
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2180.6 3214 41.3
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2180.6 3195 41.4
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2157.1 3231 40.6
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2145.9 2066 55.5
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2124.4 3267 40.6
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2115.9 3171 40.9
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2115.5 3250 39.9
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2114.3 3237 40.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2105.9 3233 39.8
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2096.6 3117 40.7
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2080.4 3246 39.4
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2080.4 3246 39.4
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2075.8 3237 39.8
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2074.3 3318 39.6
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2044.6 3231 39.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2036.2 3289 38.8
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2031.5 3247 38.9
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2021.5 3056 39.9
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1998.8 3263 39.0
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1978.0 3241 39.0
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1936.4 2929 40.3
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1928.3 2264 46.6
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1927.1 2386 46.5
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1911.3 3327 37.4
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1894.8 2497 43.7
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1758.4 1720 53.7
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1741.1 2878 38.3
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1723.0 1779 52.0
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1716.8 1203 71.2
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1706.8 3280 35.2
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1704.5 2936 37.2
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1657.1 1853 50.5
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1569.7 1377 58.5
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1528.1 1667 49.8
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1518.8 1293 59.8
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1511.1 1453 54.3
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1489.9 1337 57.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1460.7 1593 50.7
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1459.1 1338 56.4
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1400.6 1728 45.4
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1370.1 3219 32.4
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1336.6 1219 57.3
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1304.7 1356 51.7
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1274.6 2584 35.1
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1182.9 2071 36.8
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1129.8 2182 33.8
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 0.0e+00 1089.7 1997 35.5
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.0e-291 1007.7 2581 30.2
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 3.7e-285 986.9 1324 43.1
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.3e-274 951.8 1105 47.1
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 6.5e-274 949.5 1402 41.5
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 4.7e-240 837.0 598 70.6
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 1.6e-232 812.0 1919 31.1
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 2.0e-206 725.3 1886 30.3
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 4.0e-199 701.0 667 56.8
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.8e-170 605.9 1742 29.6
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 7.4e-161 573.9 2159 26.7
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 2.9e-141 508.8 916 36.1
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 3.8e-141 508.4 469 57.4
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 2.7e-134 485.7 1589 28.2
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.7e-120 439.9 924 34.1
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 5.2e-114 418.3 448 48.2
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 1.5e-113 416.8 898 31.4
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 6.6e-109 401.4 1336 26.3
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.6e-107 395.6 1330 26.5
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.1e-106 392.5 1320 26.5
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 5.2e-106 391.7 887 32.4
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 8.4e-104 384.4 948 30.6
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.1e-95 357.5 325 60.6
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.3e-91 344.0 866 29.2
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 1.2e-86 327.4 923 27.4
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 2.7e-86 326.2 1223 25.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 7.9e-86 324.7 216 73.6
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 7.4e-84 318.2 862 28.7
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.5e-81 310.5 876 27.6
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 8.2e-75 288.1 222 66.2
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 9.0e-66 258.1 382 42.4
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.2e-59 236.9 209 57.9
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 8.2e-59 235.0 1231 24.1
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 5.5e-55 222.2 233 55.8
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.8e-50 207.2 442 31.2
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 3.5e-49 203.0 146 69.2
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 4.5e-49 202.6 153 67.3
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 5.9e-49 202.2 152 67.8
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 8.8e-45 188.3 133 72.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 2.0e-44 187.2 681 25.3
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-43 182.2 462 31.0
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.4e-42 181.0 105 85.7
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 4.8e-35 156.0 204 43.6
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.3e-32 147.9 154 51.3
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.9e-32 146.7 170 52.4
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.9e-31 144.1 209 42.6
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 5.5e-31 142.5 563 25.2
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 1.6e-30 141.0 886 23.4
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 5.9e-25 122.5 113 54.0
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 8.6e-24 118.6 327 30.3
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 1.1e-23 118.2 207 35.7
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 8.0e-22 112.1 193 34.7
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.3e-21 110.5 73 75.3
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.5e-20 107.8 64 82.8
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-18 100.1 651 22.3
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 1.5e-12 81.3 121 43.0
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 5.8e-12 79.3 493 21.1
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 9.8e-12 78.6 102 42.2
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 3.2e-10 73.6 802 19.8
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 3.2e-10 73.6 74 51.4
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 9.2e-10 72.0 506 22.3
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.0e-09 70.9 65 50.8
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 2.7e-09 70.5 288 25.7
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 4.6e-09 69.7 505 20.8
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 4.6e-09 69.7 52 69.2
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 5.0e-08 66.2 758 18.7
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 1.1e-07 65.1 173 27.7
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.5e-07 64.7 569 21.1
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.9e-07 64.3 763 18.6
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 4.3e-07 63.2 234 23.5
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 5.6e-07 62.8 470 19.6
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 9.5e-07 62.0 123 38.2
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 2.8e-06 60.5 402 20.6
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 3.6e-06 60.1 531 20.7
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 6.2e-06 59.3 459 19.4


User provided reference genes

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