Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13994 Selenicereus undatus HOM05D004293 ORTHO05D005044 1.8e-142 509.2 255 100.0
Hund16444 Selenicereus undatus HOM05D004293 ORTHO05D005044 3.1e-94 349.0 349 55.9
AUR62007593 Chenopodium quinoa HOM05D000025 ORTHO05D005044 7.7e-93 344.4 341 55.1
AUR62004081 Chenopodium quinoa HOM05D004293 ORTHO05D005044 3.8e-92 342.0 321 57.3
EL10Ac6g15533 Beta vulgaris HOM05D004293 ORTHO05D005044 5.5e-91 338.2 347 54.2
Dinv40005 Davidia involucrata HOM05D004293 ORTHO05D005044 6.8e-81 304.7 338 49.1
Atru.chr13.442 Acer truncatum HOM05D004293 ORTHO05D005044 1.3e-79 300.4 332 47.9
Ciclev10001409m.g Citrus clementina HOM05D004293 ORTHO05D005044 1.7e-79 300.1 323 49.2
Cfa018181 Carpinus fangiana HOM05D004293 ORTHO05D005044 1.4e-78 297.0 333 48.0
Haze_17937 Corylus avellana HOM05D004293 ORTHO05D005044 1.8e-78 296.6 333 48.0
TAR376G0140 Trochodendron aralioides HOM05D004293 ORTHO05D005044 3.1e-78 295.8 323 49.2
CARHR020140 Cardamine hirsuta HOM05D004293 ORTHO05D005044 4.1e-78 295.4 317 48.6
TWI36G0587 Tripterygium wilfordii HOM05D004293 ORTHO05D005044 4.1e-78 295.4 321 49.8
TAR628G1187 Trochodendron aralioides HOM05D004293 ORTHO05D005044 7.0e-78 294.7 323 49.5
CSS0016695 Camellia sinensis var. sinensis HOM05D004293 ORTHO05D005044 1.2e-77 293.9 338 46.7
Dinv36104 Davidia involucrata HOM05D004293 ORTHO05D005044 1.2e-77 293.9 321 49.2
Sc15g0003400 Simmondsia chinensis HOM05D004293 ORTHO05D005044 1.2e-77 293.9 326 47.2
Sp1g17440 Schrenkiella parvula HOM05D004293 ORTHO05D005044 1.6e-77 293.5 317 49.5
Peaxi162Scf00140g00021 Petunia axillaris HOM05D004293 ORTHO05D005044 2.0e-77 293.1 335 47.2
CANSAT25G3633 Cannabis sativa HOM05D004293 ORTHO05D005044 5.9e-77 291.6 326 48.8
Thhalv10008038m.g Eutrema salsugineum HOM05D004293 ORTHO05D005044 5.9e-77 291.6 317 48.9
Manes.18G022600 Manihot esculenta HOM05D004293 ORTHO05D005044 5.9e-77 291.6 321 47.0
Thecc.08G030000 Theobroma cacao HOM05D004293 ORTHO05D005044 7.7e-77 291.2 336 46.7
AT1G19600 Arabidopsis thaliana HOM05D004293 ORTHO05D005044 1.0e-76 290.8 317 48.6
Aa31LG7G4220 Aethionema arabicum HOM05D004293 ORTHO05D005044 2.3e-76 289.7 324 47.8
THA.LOC104811379 Tarenaya hassleriana HOM05D004293 ORTHO05D005044 2.9e-76 289.3 333 47.4
CiPaw.15G081500 Carya illinoinensis HOM05D004293 ORTHO05D005044 3.8e-76 288.9 322 47.5
AL1G32320 Arabidopsis lyrata HOM05D004293 ORTHO05D005044 5.0e-76 288.5 317 48.3
BcaC05g25831 Brassica carinata HOM05D004293 ORTHO05D005044 5.0e-76 288.5 326 47.5
A06p15760 Brassica napus HOM05D004293 ORTHO05D005044 5.0e-76 288.5 326 47.5
BolC5t30515H Brassica oleracea HOM05D004293 ORTHO05D005044 5.0e-76 288.5 326 47.5
BraA06t24685Z Brassica rapa HOM05D004293 ORTHO05D005044 5.0e-76 288.5 326 47.5
DCAR_025956 Daucus carota HOM05D004293 ORTHO05D005044 5.0e-76 288.5 324 47.8
FAN20G0470 Fragaria x ananassa HOM05D004293 ORTHO05D005044 5.0e-76 288.5 348 47.1
Potri.005G229100 Populus trichocarpa HOM05D004293 ORTHO05D005044 5.0e-76 288.5 321 46.4
Sabra05G0177000 Salix brachista HOM05D004293 ORTHO05D005044 5.0e-76 288.5 321 46.1
Actinidia29816 Actinidia chinensis HOM05D004293 ORTHO05D005044 6.6e-76 288.1 213 63.4
C05p18070 Brassica napus HOM05D004293 ORTHO05D005044 8.6e-76 287.7 326 47.2
Potri.002G034000 Populus trichocarpa HOM05D004293 ORTHO05D005044 1.1e-75 287.3 321 47.0
Prupe.1G376800 Prunus persica HOM05D004293 ORTHO05D005044 1.5e-75 287.0 344 48.0
CDE02G3095 Ceratophyllum demersum HOM05D004293 ORTHO05D005044 1.9e-75 286.6 321 48.0
Gohir.A05G192700 Gossypium hirsutum HOM05D004293 ORTHO05D005044 1.9e-75 286.6 323 48.3
MD15G1024500 Malus domestica HOM05D004293 ORTHO05D005044 1.9e-75 286.6 336 48.8
BcaB07g31976 Brassica carinata HOM05D004293 ORTHO05D005044 2.5e-75 286.2 327 48.0
Carub.0001s1914 Capsella rubella HOM05D004293 ORTHO05D005044 3.3e-75 285.8 317 47.6
Dinv39438 Davidia involucrata HOM05D004293 ORTHO05D005044 3.3e-75 285.8 321 47.4
Glyma.04G030600 Glycine max HOM05D004293 ORTHO05D005044 3.3e-75 285.8 325 46.8
PGSC0003DMG400003693 Solanum tuberosum HOM05D004293 ORTHO05D005044 3.3e-75 285.8 337 45.1
FAN15G0341 Fragaria x ananassa HOM05D004293 ORTHO05D005044 4.2e-75 285.4 337 47.2
Lj1g0022848 Lotus japonicus HOM05D004293 ORTHO05D005044 4.2e-75 285.4 331 46.5
MBI10_g06734_MAGBIO Magnolia biondii HOM05D004293 ORTHO05D005044 4.2e-75 285.4 331 47.4
Rhsim07G0240800 Rhododendron simsii HOM05D004293 ORTHO05D005044 4.2e-75 285.4 336 46.4
RhsimUnG0051700 Rhododendron simsii HOM05D004293 ORTHO05D005044 4.2e-75 285.4 336 46.4
Sabra02G0027300 Salix brachista HOM05D004293 ORTHO05D005044 4.2e-75 285.4 213 61.5
Cpa.g.sc800.2 Carica papaya HOM05D004293 ORTHO05D005044 5.5e-75 285.0 213 62.4
QL02p009229 Quercus lobata HOM05D004293 ORTHO05D005044 5.5e-75 285.0 338 45.3
CSS0029393 Camellia sinensis var. sinensis HOM05D004293 ORTHO05D005044 7.2e-75 284.6 321 49.5
Eucgr.F01882 Eucalyptus grandis HOM05D004293 ORTHO05D005044 7.2e-75 284.6 322 47.2
Gohir.D05G195900 Gossypium hirsutum HOM05D004293 ORTHO05D005044 7.2e-75 284.6 323 48.0
Medtr3g112040 Medicago truncatula HOM05D004293 ORTHO05D005044 7.2e-75 284.6 328 46.3
PGR031G3321 Punica granatum HOM05D004293 ORTHO05D005044 7.2e-75 284.6 334 46.7
VMungo1309G1848 Vigna mungo HOM05D004293 ORTHO05D005044 7.2e-75 284.6 319 46.4
Migut.C00751 Erythranthe guttata HOM05D004293 ORTHO05D005044 9.5e-75 284.3 322 47.5
Sopen04g034170 Solanum pennellii HOM05D004293 ORTHO05D005044 9.5e-75 284.3 337 44.8
Duzib041G0612 Durio zibethinus HOM05D004293 ORTHO05D005044 1.2e-74 283.9 217 60.8
Gohir.D05G260400 Gossypium hirsutum HOM05D004293 ORTHO05D005044 1.2e-74 283.9 332 46.1
Gorai.009G272300 Gossypium raimondii HOM05D004293 ORTHO05D005044 1.2e-74 283.9 332 46.1
MD08G1029000 Malus domestica HOM05D004293 ORTHO05D005044 1.6e-74 283.5 327 48.3
Manes.05G157500 Manihot esculenta HOM05D004293 ORTHO05D005044 1.6e-74 283.5 213 62.0
RcHm_v2.0_Chr6g0301341 Rosa chinensis HOM05D004293 ORTHO05D005044 1.6e-74 283.5 341 46.3
Aqoxy6G01151 Aquilegia oxysepala HOM05D004293 ORTHO05D005044 2.8e-74 282.7 322 46.6
CiPaw.16G060300 Carya illinoinensis HOM05D004293 ORTHO05D005044 2.8e-74 282.7 322 46.9
Solyc04g080580.3 Solanum lycopersicum HOM05D004293 ORTHO05D005044 2.8e-74 282.7 337 44.5
arahy.Tifrunner.gnm1.ann1.0FN7J8 Arachis hypogaea HOM05D004293 ORTHO05D005044 4.7e-74 282.0 322 46.3
arahy.Tifrunner.gnm1.ann1.5L5Q4S Arachis hypogaea HOM05D004293 ORTHO05D005044 4.7e-74 282.0 322 46.3
COL.COLO4_26281 Corchorus olitorius HOM05D004293 ORTHO05D005044 4.7e-74 282.0 336 45.8
FAN27G1442 Fragaria x ananassa HOM05D004293 ORTHO05D005044 4.7e-74 282.0 337 46.9
Gorai.009G200800 Gossypium raimondii HOM05D004293 ORTHO05D005044 4.7e-74 282.0 323 48.0
Phvul.001G013100 Phaseolus vulgaris HOM05D004293 ORTHO05D005044 6.1e-74 281.6 337 44.8
GSVIVG01009736001 Vitis vinifera HOM05D004293 ORTHO05D005044 6.1e-74 281.6 213 62.4
Glyma.17G251900 Glycine max HOM05D004293 ORTHO05D005044 1.0e-73 280.8 331 44.7
Phvul.009G059500 Phaseolus vulgaris HOM05D004293 ORTHO05D005044 1.8e-73 280.0 340 44.4
Glyma.14G073100 Glycine max HOM05D004293 ORTHO05D005044 3.0e-73 279.3 332 44.6
CAN.G1226.41 Capsicum annuum HOM05D004293 ORTHO05D005044 4.0e-73 278.9 337 44.2
Gohir.A05G258700 Gossypium hirsutum HOM05D004293 ORTHO05D005044 4.0e-73 278.9 332 45.5
SGA_v2.0_scaffold11G05816 Striga asiatica HOM05D004293 ORTHO05D005044 4.0e-73 278.9 324 46.9
Ca_13360_v3 Cicer arietinum L. HOM05D004293 ORTHO05D005044 5.2e-73 278.5 329 45.6
CsaV3_2G028890 Cucumis sativus L. HOM05D004293 ORTHO05D005044 5.2e-73 278.5 323 45.8
Nitab4.5_0008031g0020 Nicotiana tabacum HOM05D004293 ORTHO05D005044 8.9e-73 277.7 214 60.3
Ca_15502_v3 Cicer arietinum L. HOM05D004293 ORTHO05D005044 1.2e-72 277.3 325 45.8
vmacro04534 Vaccinium macrocarpon HOM05D004293 ORTHO05D005044 1.2e-72 277.3 213 61.0
Duzib093G2062 Durio zibethinus HOM05D004293 ORTHO05D005044 1.5e-72 276.9 337 46.0
Oeu002826.1 Olea europaea HOM05D004293 ORTHO05D005044 2.0e-72 276.6 226 60.2
arahy.Tifrunner.gnm1.ann1.KUDP7J Arachis hypogaea HOM05D004293 ORTHO05D005044 3.4e-72 275.8 213 59.2
Lj5g0013851 Lotus japonicus HOM05D004293 ORTHO05D005044 3.4e-72 275.8 213 59.6
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 4.4e-72 275.4 226 58.0
ATR0568G055 Amborella trichopoda HOM05D004293 ORTHO05D005044 7.5e-72 274.6 198 64.1
arahy.Tifrunner.gnm1.ann1.D196G9 Arachis hypogaea HOM05D004293 ORTHO05D005044 7.5e-72 274.6 213 58.7
TPR.G12384 Trifolium pratense HOM05D004293 ORTHO05D005044 7.5e-72 274.6 200 61.5
MSTRG.25186 Avicennia marina HOM05D004293 ORTHO05D005044 1.3e-71 273.9 226 58.0
FvH4_2g39580 Fragaria vesca HOM05D004293 ORTHO05D005044 1.7e-71 273.5 348 45.4
VMungo0647G0812 Vigna mungo HOM05D004293 ORTHO05D005044 1.7e-71 273.5 326 44.2
Psat5g016560 Pisum sativum HOM05D004293 ORTHO05D005044 2.8e-71 272.7 213 58.2
MELO3C010959.2 Cucumis melo HOM05D004293 ORTHO05D005044 3.7e-71 272.3 323 44.9
Nitab4.5_0003265g0120 Nicotiana tabacum HOM05D004293 ORTHO05D005044 3.7e-71 272.3 214 59.3
Lalb_Chr22g0354691 Lupinus albus HOM05D004293 ORTHO05D005044 1.8e-70 270.0 213 57.7
Nn5g29655 Nelumbo nucifera HOM05D004293 ORTHO05D005044 1.8e-70 270.0 267 53.6
Ah.03g141070 Amaranthus hybridus HOM05D004293 ORTHO05D005044 2.4e-70 269.6 355 46.8
Oeu063615.3 Olea europaea HOM05D004293 ORTHO05D005044 1.2e-69 267.3 198 63.6
Cc10_g02630 Coffea canephora HOM05D004293 ORTHO05D005044 2.7e-69 266.2 218 58.3
Sed0017600 Sechium edule HOM05D004293 ORTHO05D005044 2.7e-69 266.2 213 58.7
Zm00001eb126820 Zea mays HOM05D004293 ORTHO05D005044 7.8e-69 264.6 213 59.2
HanXRQChr05g0151741 Helianthus annuus HOM05D004293 ORTHO05D005044 1.3e-68 263.8 198 61.6
Os01g0105900 Oryza sativa ssp. japonica HOM05D004293 ORTHO05D005044 1.3e-68 263.8 213 59.2
Sed0003816 Sechium edule HOM05D004293 ORTHO05D005044 1.7e-68 263.5 198 62.1
ECA246G0240 Erigeron canadensis HOM05D004293 ORTHO05D005044 5.0e-68 261.9 198 62.1
PSO170G4681 Papaver somniferum HOM05D004293 ORTHO05D005044 1.9e-67 260.0 321 45.2
Lsat_1_v5_gn_5_27761 Lactuca sativa HOM05D004293 ORTHO05D005044 2.5e-67 259.6 198 60.6
ClCG08G014870 Citrullus lanatus HOM05D004293 ORTHO05D005044 1.6e-66 256.9 364 40.4
unitig_37.g12996 Utricularia gibba HOM05D004293 ORTHO05D005044 4.7e-66 255.4 213 56.8
Atru.chr3.817 Acer truncatum HOM05D004293 ORTHO05D005044 7.5e-64 248.1 217 55.8
GSVIVG01024614001 Vitis vinifera HOM05D004293 ORTHO05D005044 1.0e-60 237.7 198 56.6
SEGI_26481 Sequoiadendron giganteum HOM05D004293 ORTHO05D005044 6.6e-60 235.0 318 39.9
BcaB07g31974 Brassica carinata HOM05D004293 ORTHO05D005044 1.2e-58 230.7 327 42.2
PSO210G1862 Papaver somniferum HOM05D004293 ORTHO05D005044 8.1e-58 228.0 286 45.5
SMO119G0092 Selaginella moellendorffii HOM05D004293 ORTHO05D005044 9.8e-56 221.1 334 37.4
Pp3c18_21330 Physcomitrium patens HOM05D004293 ORTHO05D005044 3.7e-55 219.2 317 39.4
Pp3c21_3850 Physcomitrium patens HOM05D004293 ORTHO05D005044 8.3e-55 218.0 216 48.1
HPP92_000286 Vanilla planifolia HOM05D004293 ORTHO05D005044 2.7e-53 213.0 318 39.6
Mapoly0012s0094 Marchantia polymorpha HOM05D004293 ORTHO05D005044 1.3e-52 210.7 212 48.1
Actinidia38000 Actinidia chinensis HOM05D004293 ORTHO05D005044 1.1e-51 207.6 233 48.1
MSTRG.1266 Avicennia marina HOM05D004293 ORTHO05D005044 1.8e-49 200.3 162 58.6
CDE06G2583 Ceratophyllum demersum HOM05D004293 ORTHO05D005044 1.6e-45 187.2 132 65.2
Atru.chr3.818 Acer truncatum HOM05D004293 ORTHO05D005044 2.5e-43 179.9 288 37.2
AagrBONN_evm.TU.Sc2ySwM_368.426 Anthoceros agrestis HOM05D004293 ORTHO05D005044 5.6e-43 178.7 202 43.6
Glyma.09G161200 Glycine max HOM05D004293 ORTHO05D005044 1.3e-39 167.5 177 44.6
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.3e-39 167.5 223 42.6
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 5.1e-36 155.6 207 42.0
arahy.Tifrunner.gnm1.ann1.C7KMBV Arachis hypogaea HOM05D004293 ORTHO05D005044 7.1e-30 135.2 109 56.9
arahy.Tifrunner.gnm1.ann1.IMH851 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.3e-28 131.0 110 55.5
Peaxi162Scf00552g00045 Petunia axillaris HOM05D004293 ORTHO05D005044 2.0e-24 117.1 136 49.3
Zm00001eb334210 Zea mays HOM05D004293 ORTHO05D005044 2.9e-23 113.2 198 38.4
GSVIVG01035260001 Vitis vinifera HOM05D000084 ORTHO05D000363 2.1e-21 107.1 88 56.8
MCO08G314 Micromonas commoda HOM05D004293 ORTHO05D005044 1.0e-20 104.8 248 29.4
Cre07.g331800 Chlamydomonas reinhardtii HOM05D004293 ORTHO05D005044 1.8e-20 104.0 229 28.4
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.9e-20 102.8 89 52.8
GSVIVG01013574001 Vitis vinifera HOM05D000084 ORTHO05D000363 3.9e-20 102.8 89 52.8
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.9e-19 100.5 263 27.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 5.6e-19 99.0 89 51.7
GSVIVG01006581001 Vitis vinifera HOM05D004293 ORTHO05D005044 2.8e-18 96.7 70 60.0
arahy.Tifrunner.gnm1.ann1.K82YC3 Arachis hypogaea HOM05D004293 ORTHO05D005044 2.4e-17 93.6 80 55.0
arahy.Tifrunner.gnm1.ann1.CV7JLA Arachis hypogaea HOM05D004293 ORTHO05D005044 2.0e-16 90.5 80 52.5
arahy.Tifrunner.gnm1.ann1.GKM7KP Arachis hypogaea HOM05D004293 ORTHO05D005044 2.0e-16 90.5 67 59.7
GSVIVG01019088001 Vitis vinifera HOM05D000084 ORTHO05D013654 7.6e-16 88.6 67 58.2
GSVIVG01021492001 Vitis vinifera HOM05D000084 ORTHO05D013654 4.2e-14 82.8 61 60.7
GSVIVG01034297001 Vitis vinifera HOM05D004293 ORTHO05D005044 6.0e-13 79.0 62 59.7
arahy.Tifrunner.gnm1.ann1.H5S4YV Arachis hypogaea HOM05D004293 ORTHO05D005044 1.3e-12 77.8 140 34.3
arahy.Tifrunner.gnm1.ann1.0W95S5 Arachis hypogaea HOM05D004293 ORTHO05D005044 3.9e-12 76.3 78 46.2
arahy.Tifrunner.gnm1.ann1.1P6ZJY Arachis hypogaea HOM05D004293 ORTHO05D005044 1.1e-11 74.7 87 47.1
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 9.6e-11 71.6 51 60.8
BolC5t30978H Brassica oleracea HOM05D004293 ORTHO05D015229 4.5e-08 62.8 64 46.9
C04p08650 Brassica napus HOM05D004293 ORTHO05D015229 5.8e-08 62.4 64 46.9
PRCOL_00006221 Prasinoderma coloniale HOM05D004293 ORTHO05D005044 7.6e-08 62.0 205 28.3
arahy.Tifrunner.gnm1.ann1.TKUN13 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.7e-07 60.8 71 40.8
AagrBONN_evm.TU.Sc2ySwM_344.936 Anthoceros agrestis HOM05D006163 ORTHO05D007625 2.9e-07 60.1 131 31.3
CDE06G0346 Ceratophyllum demersum HOM05D004293 ORTHO05D005044 3.8e-07 59.7 37 67.6
arahy.Tifrunner.gnm1.ann1.4DL9G8 Arachis hypogaea HOM05D004293 ORTHO05D005044 5.0e-07 59.3 73 43.8
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-07 59.3 52 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1170 Anthoceros agrestis HOM05D002910 ORTHO05D003235 6.5e-07 58.9 222 26.1
AagrBONN_evm.TU.Sc2ySwM_228.425 Anthoceros agrestis HOM05D002910 ORTHO05D003235 8.4e-07 58.5 222 26.6
Pp3c2_520 Physcomitrium patens HOM05D006163 ORTHO05D007625 1.4e-06 57.8 130 29.2


User provided reference genes

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