Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.7e-94 349.4 185 100.0
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 9.0e-67 257.3 182 73.6
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 5.8e-66 254.6 172 73.3
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 3.8e-65 251.9 176 71.0
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 4.2e-64 248.4 168 72.6
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 1.2e-63 246.9 163 74.8
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.1e-63 246.1 172 72.1
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 2.7e-63 245.7 172 71.5
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 3.5e-63 245.4 168 72.6
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 6.0e-63 244.6 172 70.9
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.0e-62 243.8 156 77.6
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.0e-62 243.8 157 76.4
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.8e-62 243.0 167 73.1
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.3e-62 242.7 169 70.4
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 3.0e-62 242.3 171 70.8
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 3.0e-62 242.3 173 71.7
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 5.1e-62 241.5 183 70.5
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 6.7e-62 241.1 173 70.5
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 8.7e-62 240.7 168 70.8
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 8.7e-62 240.7 172 69.8
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.5e-61 240.0 160 73.8
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.5e-61 240.0 168 70.2
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.9e-61 239.6 169 68.6
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 1.9e-61 239.6 167 71.3
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.5e-61 239.2 172 72.1
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 2.5e-61 239.2 173 69.4
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 5.6e-61 238.0 164 72.0
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 5.6e-61 238.0 169 68.6
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.6e-61 238.0 164 71.3
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 7.4e-61 237.7 165 70.9
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 9.6e-61 237.3 167 69.5
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 9.6e-61 237.3 158 72.8
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 1.3e-60 236.9 173 68.2
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.3e-60 236.9 164 70.7
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.6e-60 236.5 168 69.6
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.6e-60 236.5 166 70.5
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 2.1e-60 236.1 167 68.9
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 2.1e-60 236.1 167 68.9
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 2.1e-60 236.1 173 69.4
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.1e-60 236.1 168 69.6
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-60 236.1 168 69.6
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 2.1e-60 236.1 176 68.2
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.8e-60 235.7 163 71.2
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 3.7e-60 235.3 168 69.0
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 3.7e-60 235.3 166 72.3
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 4.8e-60 235.0 169 69.8
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 6.2e-60 234.6 171 67.3
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 8.1e-60 234.2 169 68.0
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.1e-59 233.8 164 70.1
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.1e-59 233.8 167 68.9
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 1.1e-59 233.8 169 68.6
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.1e-59 233.8 166 69.9
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.4e-59 233.4 163 69.9
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 2.4e-59 232.6 173 68.2
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 3.1e-59 232.3 166 68.7
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 3.1e-59 232.3 166 68.7
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 3.1e-59 232.3 168 67.3
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 4.0e-59 231.9 168 68.5
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 4.0e-59 231.9 172 70.3
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.3e-59 231.5 167 71.9
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.3e-59 231.5 163 70.6
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 5.3e-59 231.5 168 69.6
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 6.9e-59 231.1 169 69.2
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 6.9e-59 231.1 162 69.1
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 9.0e-59 230.7 168 67.9
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 9.0e-59 230.7 174 66.1
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 9.0e-59 230.7 173 67.6
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.2e-58 230.3 169 66.9
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 2.0e-58 229.6 179 65.4
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 7.6e-58 227.6 172 68.6
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 1.0e-57 227.3 162 67.9
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.3e-57 226.9 177 66.1
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 1.7e-57 226.5 157 71.3
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 3.8e-57 225.3 165 67.3
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 1.4e-56 223.4 156 72.4
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.4e-56 223.4 174 64.9
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 1.4e-56 223.4 170 68.2
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.9e-56 223.0 166 68.7
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 2.5e-56 222.6 156 71.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 5.5e-56 221.5 166 65.7
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 9.3e-56 220.7 176 64.2
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 1.2e-55 220.3 201 58.7
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.5e-55 218.8 164 68.9
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 4.6e-55 218.4 166 66.9
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 6.0e-55 218.0 177 64.4
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 6.0e-55 218.0 155 67.7
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 7.9e-55 217.6 172 65.7
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.0e-54 217.2 156 71.2
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 1.0e-54 217.2 156 69.9
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 1.8e-54 216.5 155 69.0
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 2.3e-54 216.1 158 67.7
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 3.9e-54 215.3 157 70.1
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.9e-54 215.3 158 69.0
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 6.7e-54 214.5 160 67.5
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 8.7e-54 214.2 166 66.3
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 8.7e-54 214.2 155 69.7
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.5e-53 213.4 171 64.9
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.9e-53 213.0 177 61.6
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 1.9e-53 213.0 165 64.8
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.9e-53 213.0 166 65.7
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 2.5e-53 212.6 157 68.2
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 4.3e-53 211.8 164 67.1
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 9.6e-53 210.7 161 64.0
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.3e-52 210.3 163 64.4
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.3e-52 208.0 202 56.9
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 3.1e-51 205.7 177 62.7
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.0e-50 203.0 157 66.2
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 4.5e-50 201.8 214 54.7
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.6e-50 201.1 173 61.8
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 3.8e-49 198.7 146 65.8
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 4.2e-48 195.3 162 64.2
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.2e-48 195.3 135 72.6
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 7.2e-48 194.5 171 60.8
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.7e-47 192.6 157 61.1
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 6.1e-47 191.4 167 59.9
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.5e-45 186.8 156 57.7
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.9e-45 186.4 153 60.1
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 3.3e-45 185.7 195 52.3
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.3e-45 185.3 136 66.2
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 2.2e-44 183.0 149 63.8
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 2.8e-44 182.6 134 67.9
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.8e-44 181.8 177 55.4
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.1e-43 180.6 165 57.6
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.1e-40 170.6 120 66.7
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.9e-40 169.9 128 60.9
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 2.5e-40 169.5 157 56.7
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 7.9e-39 164.5 111 74.8
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 1.0e-38 164.1 171 52.6
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.0e-38 162.5 116 69.8
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 3.0e-38 162.5 142 63.4
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 8.8e-38 161.0 175 53.7
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.5e-34 150.2 114 66.7
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 5.9e-34 148.3 111 68.5
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 1.0e-33 147.5 162 51.2
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 1.4e-32 143.7 98 69.4
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 1.6e-31 140.2 166 47.6
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 7.9e-31 137.9 120 58.3
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 2.0e-29 133.3 157 48.4
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.7e-28 130.2 108 61.1
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 4.8e-28 128.6 93 69.9
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 7.7e-26 121.3 80 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 6.1e-23 111.7 108 54.6
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.0e-22 110.9 91 64.8
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 4.0e-22 109.0 153 40.5
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 1.8e-19 100.1 182 35.2
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 1.6e-18 97.1 59 76.3
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 4.5e-18 95.5 94 56.4
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 1.1e-16 90.9 60 71.7
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 2.7e-15 86.3 112 47.3
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.7e-15 85.5 66 60.6
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.8e-14 83.6 56 76.8
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 8.8e-14 81.3 59 62.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 8.8e-14 81.3 59 62.7
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 4.4e-13 79.0 61 63.9
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.7e-12 77.0 166 30.7
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.4e-11 73.9 151 34.4
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 2.0e-10 70.1 214 24.8
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 1.3e-09 67.4 45 66.7
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.7e-09 67.0 47 72.3


User provided reference genes

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