Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13855 Selenicereus undatus HOM05D004515 ORTHO05D006013 8.8e-63 243.4 121 100.0
Sc11g0005040 Simmondsia chinensis HOM05D004515 ORTHO05D006013 1.6e-40 169.5 155 60.0
AUR62012243 Chenopodium quinoa HOM05D004515 ORTHO05D006013 3.0e-39 165.2 155 57.4
AUR62022874 Chenopodium quinoa HOM05D004515 ORTHO05D006013 1.5e-38 162.9 155 57.4
Sabra08G0049800 Salix brachista HOM05D004515 ORTHO05D006013 3.4e-38 161.8 156 60.9
EL10Ac2g04822 Beta vulgaris HOM05D004515 ORTHO05D006013 4.4e-38 161.4 155 58.7
TAR633G2451 Trochodendron aralioides HOM05D004515 ORTHO05D006013 9.8e-38 160.2 155 56.1
Cpa.g.sc19.178 Carica papaya HOM05D004515 ORTHO05D006013 2.2e-37 159.1 155 55.5
Dinv10627 Davidia involucrata HOM05D004515 ORTHO05D006013 2.2e-37 159.1 155 55.5
CiPaw.02G192100 Carya illinoinensis HOM05D004515 ORTHO05D006013 2.8e-37 158.7 155 58.1
Gohir.A06G163900 Gossypium hirsutum HOM05D004515 ORTHO05D006013 2.8e-37 158.7 156 59.0
Gohir.D06G169400 Gossypium hirsutum HOM05D004515 ORTHO05D006013 2.8e-37 158.7 156 59.0
Gorai.010G198300 Gossypium raimondii HOM05D004515 ORTHO05D006013 2.8e-37 158.7 156 59.0
Atru.chr12.26 Acer truncatum HOM05D004515 ORTHO05D006013 3.7e-37 158.3 155 56.1
Potri.008G067900 Populus trichocarpa HOM05D004515 ORTHO05D006013 3.7e-37 158.3 156 59.6
Ah.16g103480 Amaranthus hybridus HOM05D004515 ORTHO05D006013 4.9e-37 157.9 155 57.4
Hma1.2p1_0703F.1_g206460 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 6.3e-37 157.5 153 55.6
Manes.10G013300 Manihot esculenta HOM05D004515 ORTHO05D006013 6.3e-37 157.5 155 55.5
FvH4_7g24400 Fragaria vesca HOM05D004515 ORTHO05D006013 3.1e-36 155.2 155 56.8
FAN06G0292 Fragaria x ananassa HOM05D004515 ORTHO05D006013 3.1e-36 155.2 155 56.8
RcHm_v2.0_Chr1g0370101 Rosa chinensis HOM05D004515 ORTHO05D006013 3.1e-36 155.2 155 56.8
Manes.07G128900 Manihot esculenta HOM05D004515 ORTHO05D006013 1.2e-35 153.3 156 57.1
Prupe.2G249400 Prunus persica HOM05D004515 ORTHO05D006013 1.6e-35 152.9 155 54.2
Thecc.10G018200 Theobroma cacao HOM05D004515 ORTHO05D006013 1.6e-35 152.9 156 57.7
Ciclev10031189m.g Citrus clementina HOM05D004515 ORTHO05D006013 2.0e-35 152.5 155 54.8
Thhalv10016489m.g Eutrema salsugineum HOM05D004515 ORTHO05D006013 2.0e-35 152.5 156 57.1
Carub.0004s2225 Capsella rubella HOM05D004515 ORTHO05D006013 2.7e-35 152.1 156 57.1
A05p06380 Brassica napus HOM05D004515 ORTHO05D006013 3.5e-35 151.8 155 55.5
Lalb_Chr08g0231721 Lupinus albus HOM05D004515 ORTHO05D006013 3.5e-35 151.8 151 55.0
HanXRQChr14g0459811 Helianthus annuus HOM05D004515 ORTHO05D006013 4.5e-35 151.4 155 51.0
BcaB02g09054 Brassica carinata HOM05D004515 ORTHO05D006013 5.9e-35 151.0 155 54.8
MD07G1221400 Malus domestica HOM05D004515 ORTHO05D006013 7.8e-35 150.6 155 57.4
FAN10G4299 Fragaria x ananassa HOM05D000946 ORTHO05D006013 1.0e-34 150.2 155 55.5
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 1.3e-34 149.8 155 54.8
Aa31LG5G19520 Aethionema arabicum HOM05D004515 ORTHO05D006013 1.7e-34 149.4 155 53.5
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.7e-34 149.4 155 54.8
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.7e-34 149.4 155 54.8
Nn2g11487 Nelumbo nucifera HOM05D004515 ORTHO05D006013 1.7e-34 149.4 155 53.5
FAN01G2906 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.3e-34 149.1 155 55.5
Glyma.11G229300 Glycine max HOM05D004515 ORTHO05D006013 2.3e-34 149.1 150 54.7
AL4G37730 Arabidopsis lyrata HOM05D004515 ORTHO05D006013 2.9e-34 148.7 155 54.2
Oeu025167.1 Olea europaea HOM05D004515 ORTHO05D006013 2.9e-34 148.7 156 55.8
AT2G40090 Arabidopsis thaliana HOM05D004515 ORTHO05D006013 5.0e-34 147.9 156 55.1
FAN03G1195 Fragaria x ananassa HOM05D004515 ORTHO05D006013 5.0e-34 147.9 155 56.1
Lj1C955G2 Lonicera japonica HOM05D004515 ORTHO05D006013 5.0e-34 147.9 155 51.0
QL08p063123 Quercus lobata HOM05D004515 ORTHO05D006013 5.0e-34 147.9 156 55.8
TWI09G1318 Tripterygium wilfordii HOM05D004515 ORTHO05D006013 5.0e-34 147.9 155 52.3
Duzib114G1023 Durio zibethinus HOM05D004515 ORTHO05D006013 6.6e-34 147.5 156 55.1
VMungo1383G2049 Vigna mungo HOM05D004515 ORTHO05D006013 6.6e-34 147.5 150 53.3
BcaC01g05435 Brassica carinata HOM05D004515 ORTHO05D006013 8.6e-34 147.1 155 53.5
Cfa001324 Carpinus fangiana HOM05D004515 ORTHO05D006013 1.1e-33 146.7 156 55.8
ClCG11G006170 Citrullus lanatus HOM05D004515 ORTHO05D006013 1.5e-33 146.4 155 51.6
Haze_17221 Corylus avellana HOM05D004515 ORTHO05D006013 1.9e-33 146.0 155 53.5
MD01G1152400 Malus domestica HOM05D004515 ORTHO05D006013 1.9e-33 146.0 155 54.8
Phvul.001G242500 Phaseolus vulgaris HOM05D004515 ORTHO05D006013 1.9e-33 146.0 150 52.7
Aqoxy2G00906 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 2.5e-33 145.6 158 54.4
Peaxi162Scf00825g00122 Petunia axillaris HOM05D004515 ORTHO05D006013 2.5e-33 145.6 155 54.8
PGR044G1178 Punica granatum HOM05D004515 ORTHO05D006013 2.5e-33 145.6 155 53.5
Sp4g22390 Schrenkiella parvula HOM05D004515 ORTHO05D006013 2.5e-33 145.6 155 52.9
Eucgr.J00216 Eucalyptus grandis HOM05D004515 ORTHO05D006013 3.3e-33 145.2 157 55.4
Lj6g0019651 Lotus japonicus HOM05D004515 ORTHO05D006013 4.3e-33 144.8 150 53.3
CSS0001103 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 1.2e-32 143.3 155 51.6
CSS0009607 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 1.2e-32 143.3 155 51.6
Solyc06g051730.4 Solanum lycopersicum HOM05D004515 ORTHO05D006013 2.1e-32 142.5 155 52.9
Sopen06g017680 Solanum pennellii HOM05D004515 ORTHO05D006013 2.1e-32 142.5 155 52.9
Ca_15120_v3 Cicer arietinum L. HOM05D004515 ORTHO05D006013 3.6e-32 141.7 150 50.0
MELO3C008295.2 Cucumis melo HOM05D004515 ORTHO05D006013 8.0e-32 140.6 155 50.3
Migut.F01384 Erythranthe guttata HOM05D004515 ORTHO05D006013 8.0e-32 140.6 156 53.8
C03p26690 Brassica napus HOM05D004515 ORTHO05D006013 1.8e-31 139.4 143 55.2
BolC3t15054H Brassica oleracea HOM05D004515 ORTHO05D006013 1.8e-31 139.4 143 55.2
Lsat_1_v5_gn_5_153581 Lactuca sativa HOM05D004515 ORTHO05D006013 1.8e-31 139.4 155 48.4
Medtr3g070410 Medicago truncatula HOM05D004515 ORTHO05D006013 1.8e-31 139.4 151 51.0
CsaV3_6G001820 Cucumis sativus L. HOM05D004515 ORTHO05D006013 3.0e-31 138.7 155 49.7
Glyma.18G028000 Glycine max HOM05D004515 ORTHO05D006013 3.0e-31 138.7 150 52.7
BcaB01g03587 Brassica carinata HOM05D004515 ORTHO05D006013 4.0e-31 138.3 155 52.3
COL.COLO4_25712 Corchorus olitorius HOM05D004515 ORTHO05D006013 5.2e-31 137.9 152 48.7
A03p22540 Brassica napus HOM05D004515 ORTHO05D006013 6.8e-31 137.5 143 55.2
BraA03t11480Z Brassica rapa HOM05D004515 ORTHO05D006013 6.8e-31 137.5 143 55.2
TPR.G16214 Trifolium pratense HOM05D004515 ORTHO05D006013 8.9e-31 137.1 151 49.7
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 1.2e-30 136.7 155 54.2
HanXRQChr08g0222111 Helianthus annuus HOM05D004515 ORTHO05D006013 1.2e-30 136.7 152 50.0
Rhsim03G0143400 Rhododendron simsii HOM05D004515 ORTHO05D006013 1.2e-30 136.7 155 50.3
GSVIVG01032832001 Vitis vinifera HOM05D004515 ORTHO05D006013 1.2e-30 136.7 155 50.3
vmacro06973 Vaccinium macrocarpon HOM05D004515 ORTHO05D006013 1.5e-30 136.3 156 52.6
THA.LOC104810499 Tarenaya hassleriana HOM05D004515 ORTHO05D006013 2.0e-30 136.0 155 51.6
SHI03440 Sapria himalayana HOM05D004515 ORTHO05D006013 2.6e-30 135.6 129 55.0
Sed0023990 Sechium edule HOM05D004515 ORTHO05D006013 5.7e-30 134.4 155 48.4
unitig_747.g21413 Utricularia gibba HOM05D004515 ORTHO05D006013 5.7e-30 134.4 159 50.9
ECA238G3319 Erigeron canadensis HOM05D004515 ORTHO05D006013 9.8e-30 133.7 155 47.1
Lsat_1_v5_gn_8_12281 Lactuca sativa HOM05D004515 ORTHO05D006013 1.7e-29 132.9 153 47.7
Psat5g126840 Pisum sativum HOM05D004515 ORTHO05D006013 8.3e-29 130.6 151 47.7
arahy.Tifrunner.gnm1.ann1.61SRII Arachis hypogaea HOM05D004515 ORTHO05D006013 1.1e-28 130.2 150 50.0
arahy.Tifrunner.gnm1.ann1.RFU602 Arachis hypogaea HOM05D004515 ORTHO05D006013 1.1e-28 130.2 150 50.0
Cc02_g06600 Coffea canephora HOM05D004515 ORTHO05D006013 1.4e-28 129.8 155 47.7
COL.COLO4_25711 Corchorus olitorius HOM05D004515 ORTHO05D006013 4.6e-27 124.8 122 62.3
FAN06G4539 Fragaria x ananassa HOM05D004515 ORTHO05D006013 1.0e-26 123.6 148 50.0
HPP92_012630 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.0e-26 123.6 150 44.0
SGA_v2.0_scaffold44G16693 Striga asiatica HOM05D004515 ORTHO05D006013 1.7e-26 122.9 154 48.1
Os03g0698350 Oryza sativa ssp. japonica HOM05D004515 ORTHO05D006013 3.9e-26 121.7 135 48.1
PSO801G0853 Papaver somniferum HOM05D004515 ORTHO05D006013 6.6e-26 120.9 144 47.9
ECA233G1018 Erigeron canadensis HOM05D000093 ORTHO05D006013 1.1e-25 120.2 140 47.9
arahy.Tifrunner.gnm1.ann1.SW7XDE Arachis hypogaea HOM05D004515 ORTHO05D006013 4.3e-25 118.2 120 52.5
Zm00001eb216930 Zea mays HOM05D004515 ORTHO05D006013 5.6e-25 117.9 135 48.9
PSO339G0388 Papaver somniferum HOM05D004515 ORTHO05D006013 8.0e-24 114.0 144 45.8
SalBow6G5289 Salvia bowleyana HOM05D004515 ORTHO05D006013 5.2e-23 111.3 156 43.6
ATR0618G041 Amborella trichopoda HOM05D004515 ORTHO05D006013 7.5e-22 107.5 121 47.9
Pp3c22_5080 Physcomitrium patens HOM05D004515 ORTHO05D006013 1.2e-19 100.1 142 42.3
DCAR_024830 Daucus carota HOM05D004515 ORTHO05D006013 1.3e-18 96.7 155 41.9
Duzib128G1522 Durio zibethinus HOM05D004515 ORTHO05D006013 2.5e-17 92.4 122 50.8
Actinidia33927 Actinidia chinensis HOM05D004515 ORTHO05D006013 3.3e-17 92.0 134 47.0
Aqoxy168s001 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 2.8e-16 89.0 112 45.5
SMO266G0006 Selaginella moellendorffii HOM05D004515 ORTHO05D006013 2.3e-15 85.9 152 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5536 Anthoceros agrestis HOM05D004515 ORTHO05D006013 3.4e-14 82.0 142 38.0
Hund13853 Selenicereus undatus HOM05D004515 ORTHO05D006013 3.4e-14 82.0 66 68.2
HPP92_028024 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.7e-13 79.7 74 52.7
HanXRQChr09g0247951 Helianthus annuus HOM05D004515 ORTHO05D006013 8.3e-13 77.4 95 44.2
Hma1.2p1_0135F.1_g061670 Hydrangea macrophylla HOM05D000877 ORTHO05D011025 8.3e-13 77.4 42 81.0
RcHm_v2.0_Chr4g0412971 Rosa chinensis HOM05D004515 ORTHO05D006013 8.3e-13 77.4 41 85.4
Hma1.2p1_3582F.1_g336880 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 1.4e-12 76.6 52 69.2
Oeu005845.1 Olea europaea HOM05D004515 ORTHO05D006013 1.2e-11 73.6 42 83.3
Nitab4.5_0003999g0010 Nicotiana tabacum HOM05D004515 ORTHO05D006013 1.6e-11 73.2 42 81.0
arahy.Tifrunner.gnm1.ann1.RJW59X Arachis hypogaea HOM05D004515 ORTHO05D006013 2.7e-11 72.4 46 69.6
AUR62029477 Chenopodium quinoa HOM05D004515 ORTHO05D006013 6.6e-10 67.8 61 60.7
CBR_g58691 Chara braunii HOM05D004515 ORTHO05D006013 1.1e-09 67.0 142 35.9
Oeu005847.1 Olea europaea HOM05D004515 ORTHO05D290099 1.9e-09 66.2 70 55.7
CDE04G3525 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 2.5e-09 65.9 42 73.8
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 3.3e-09 65.5 43 72.1
CDE02G2203 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 4.3e-09 65.1 42 71.4
SEGI_16828 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 1.2e-08 63.5 40 70.0
SEGI_38767 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 1.1e-07 60.5 41 68.3
Cre10.g428150 Chlamydomonas reinhardtii HOM05D004515 ORTHO05D006013 3.4e-06 55.5 137 29.9


User provided reference genes

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