Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 8.9e-188 660.6 468 100.0
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 6.5e-37 159.5 280 39.3
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 2.5e-33 147.5 281 36.3
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 3.3e-33 147.1 132 58.3
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.7e-32 143.7 133 57.1
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.9e-28 131.3 127 53.5
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 3.7e-24 117.1 134 46.3
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 6.3e-24 116.3 281 33.5
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 6.3e-24 116.3 132 47.7
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 6.3e-24 116.3 132 47.7
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 6.3e-24 116.3 132 50.0
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 6.3e-24 116.3 132 49.2
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 2.4e-23 114.4 133 46.6
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 2.4e-23 114.4 134 45.5
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 4.1e-23 113.6 132 47.7
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 5.3e-23 113.2 132 47.7
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 5.3e-23 113.2 131 47.3
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 6.9e-23 112.8 134 45.5
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 3.4e-22 110.5 134 45.5
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 4.5e-22 110.2 132 46.2
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 5.9e-22 109.8 134 43.3
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 5.9e-22 109.8 134 44.8
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 1.3e-21 108.6 132 46.2
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 1.3e-21 108.6 126 47.6
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 2.9e-21 107.5 134 42.5
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 3.8e-21 107.1 132 45.5
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 6.5e-21 106.3 139 43.2
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 6.5e-21 106.3 126 46.0
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 2.5e-20 104.4 132 43.9
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 5.5e-20 103.2 132 43.9
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 5.5e-20 103.2 132 45.5
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 7.2e-20 102.8 132 43.9
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 7.2e-20 102.8 132 44.7
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 7.2e-20 102.8 126 46.0
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 1.6e-19 101.7 132 43.2
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 2.1e-19 101.3 132 41.7
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 3.6e-19 100.5 126 44.4
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 7.9e-19 99.4 132 43.2
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 7.9e-19 99.4 126 45.2
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 7.9e-19 99.4 131 45.8
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 1.0e-18 99.0 132 43.2
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 1.0e-18 99.0 127 43.3
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 1.0e-18 99.0 126 46.8
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 1.8e-18 98.2 132 43.2
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 3.0e-18 97.4 132 41.7
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 3.0e-18 97.4 131 45.0
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 3.0e-18 97.4 132 41.7
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 3.9e-18 97.1 139 41.7
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 6.7e-18 96.3 132 40.2
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 8.8e-18 95.9 126 43.7
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 8.8e-18 95.9 133 42.1
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 8.8e-18 95.9 126 42.9
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 1.1e-17 95.5 125 43.2
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 1.5e-17 95.1 132 43.2
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 3.3e-17 94.0 132 42.4
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 4.3e-17 93.6 126 43.7
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 4.3e-17 93.6 117 41.9
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 5.7e-17 93.2 126 42.9
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 1.7e-16 91.7 126 41.3
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 2.2e-16 91.3 116 40.5
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 3.7e-16 90.5 150 38.0
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 3.7e-16 90.5 126 44.4
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 8.2e-16 89.4 126 40.5
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 8.2e-16 89.4 128 39.1
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 1.1e-15 89.0 110 46.4
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 3.1e-15 87.4 95 48.4
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 3.1e-15 87.4 132 40.2
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 4.1e-15 87.0 126 43.7
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 9.1e-15 85.9 103 45.6
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 1.3e-13 82.0 169 34.3
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 3.8e-13 80.5 126 34.1
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 2.5e-12 77.8 109 41.3
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 4.2e-12 77.0 133 35.3
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 9.4e-12 75.9 104 42.3
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 1.8e-10 71.6 107 42.1
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 5.1e-10 70.1 123 35.0
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.7e-08 65.1 132 32.6
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 2.8e-08 64.3 123 29.3
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 4.8e-08 63.5 132 31.8
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 1.4e-07 62.0 92 40.2
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 1.8e-07 61.6 134 32.8
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-06 58.9 96 36.5
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 1.6e-06 58.5 55 56.4


User provided reference genes

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