Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.8e-185 650.6 347 100.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.2e-141 506.9 344 76.7
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 3.6e-141 505.4 345 78.6
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.5e-139 500.0 344 71.5
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.4e-137 493.4 346 76.0
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.3e-137 491.5 344 70.9
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 5.3e-137 491.5 344 70.9
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.5e-136 490.0 344 70.3
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 7.7e-136 487.6 344 69.2
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.7e-135 486.5 344 70.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.5e-135 484.6 349 72.8
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.1e-134 483.8 344 72.7
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.7e-133 479.2 347 69.5
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.6e-133 478.8 343 70.0
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.6e-133 478.8 344 69.8
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 3.6e-133 478.8 344 69.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.0e-132 477.2 349 71.1
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 3.0e-132 475.7 344 68.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.9e-132 475.3 350 68.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 5.1e-132 474.9 345 68.4
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.1e-131 473.8 344 67.7
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.1e-131 473.8 345 67.8
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.0e-131 473.0 344 68.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.7e-131 471.5 363 66.4
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 5.7e-131 471.5 353 68.3
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.3e-130 470.3 344 66.9
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.7e-130 469.9 344 70.6
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.7e-130 469.9 348 67.0
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 2.8e-130 469.2 349 68.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.7e-130 468.8 344 66.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 6.3e-130 468.0 348 71.8
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 8.2e-130 467.6 352 68.2
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 8.2e-130 467.6 350 66.9
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 8.2e-130 467.6 350 68.9
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.4e-129 466.8 373 64.9
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.4e-129 466.8 345 67.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.4e-129 466.1 360 70.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.4e-129 466.1 345 68.1
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.1e-129 465.3 349 69.1
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 9.1e-129 464.2 344 68.9
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.1e-129 464.2 344 67.2
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.5e-128 463.4 350 68.3
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.5e-128 463.4 344 71.2
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.0e-128 463.0 344 66.9
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.5e-128 461.8 344 67.2
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.9e-128 461.5 344 66.9
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 5.9e-128 461.5 344 65.7
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 7.7e-128 461.1 348 71.0
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 2.9e-127 459.1 346 66.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 3.8e-127 458.8 351 66.4
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 8.5e-127 457.6 347 65.7
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 3.2e-126 455.7 355 67.3
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.2e-126 455.7 344 68.3
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.2e-126 455.7 348 64.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 4.2e-126 455.3 344 67.7
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 7.2e-126 454.5 348 65.2
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-125 453.0 344 67.7
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.1e-125 453.0 344 68.0
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.7e-125 452.6 347 64.0
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 6.1e-125 451.4 348 64.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.1e-125 451.4 347 69.5
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 8.0e-125 451.1 350 64.9
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.4e-124 450.3 349 69.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.8e-124 449.9 355 68.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.9e-124 448.7 349 70.2
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 6.7e-124 448.0 349 64.2
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-123 447.2 349 64.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.1e-123 447.2 349 64.5
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.0e-123 446.4 344 64.2
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.3e-123 445.7 344 64.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.7e-123 444.9 347 66.3
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 5.7e-123 444.9 347 65.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.7e-122 443.4 344 66.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.2e-122 443.0 344 69.2
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.8e-121 439.9 347 65.7
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 3.1e-121 439.1 349 65.9
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.1e-121 438.7 344 65.7
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 9.1e-121 437.6 343 68.8
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-120 436.8 349 67.0
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.6e-120 436.0 344 62.8
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 5.9e-120 434.9 351 64.1
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.3e-119 433.7 351 65.0
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 2.2e-119 433.0 344 64.2
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.9e-119 432.6 352 65.6
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.8e-119 432.2 351 62.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 8.5e-119 431.0 347 64.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 5.5e-118 428.3 444 54.3
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.7e-117 426.0 344 66.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 8.0e-117 424.5 344 65.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 8.0e-117 424.5 344 67.7
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.3e-116 422.9 351 61.8
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.8e-116 421.4 352 60.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.5e-115 420.2 344 63.1
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.5e-115 420.2 327 64.5
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.6e-115 419.5 344 66.3
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 4.4e-115 418.7 346 60.1
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.7e-114 415.6 346 59.0
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.4e-113 412.9 349 58.7
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.4e-113 412.9 344 64.2
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.2e-112 410.6 311 67.8
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.6e-112 410.2 350 63.7
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 2.7e-112 409.5 349 59.3
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 5.9e-112 408.3 350 63.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.0e-111 407.5 350 64.0
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.0e-111 407.5 346 58.4
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.8e-111 405.6 349 63.9
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.9e-110 403.3 344 60.5
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.9e-110 403.3 343 61.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.2e-110 402.1 344 60.5
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.5e-110 401.7 343 60.9
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 7.2e-110 401.4 355 60.3
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.6e-109 400.2 346 61.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.1e-109 399.8 308 68.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.8e-108 396.7 353 60.3
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.8e-108 396.7 345 60.6
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.0e-107 393.3 346 61.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.0e-107 393.3 346 61.3
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 9.8e-107 391.0 346 59.5
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.7e-106 390.2 344 61.0
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.8e-106 389.4 348 58.0
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.8e-106 389.4 343 58.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 6.3e-106 388.3 350 57.1
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.8e-105 386.7 345 55.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.1e-105 386.0 348 60.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 2.0e-104 383.3 348 56.3
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.7e-103 380.2 345 53.9
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.5e-102 376.3 278 69.8
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 5.5e-102 375.2 294 64.6
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.3e-100 369.8 303 63.0
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 5.2e-100 368.6 433 53.3
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 8.9e-100 367.9 290 65.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 5.7e-99 365.2 346 53.8
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.3e-95 353.2 249 75.9
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.9e-95 352.8 354 57.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 8.6e-95 351.3 343 53.1
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 6.8e-92 341.7 301 63.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.9e-89 333.6 298 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.5e-86 323.9 344 48.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.1e-85 320.1 296 59.5
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.4e-83 312.4 242 65.3
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.4e-81 307.4 343 49.6
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 4.1e-81 305.8 283 58.7
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.4e-81 305.4 347 50.7
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.5e-78 297.4 242 64.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 3.3e-78 296.2 289 57.8
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.2e-77 294.3 346 43.6
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.6e-77 292.7 187 74.3
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 4.7e-77 292.4 244 63.5
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.1e-76 291.2 289 57.1
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-75 286.2 243 63.4
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 3.7e-74 282.7 228 68.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.4e-73 280.0 357 40.9
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.5e-70 270.8 283 50.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 2.5e-70 270.0 342 44.4
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.2e-68 262.3 284 51.4
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 7.6e-67 258.5 245 60.0
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 2.1e-64 250.4 244 57.8
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 3.0e-63 246.5 145 79.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 8.7e-63 245.0 245 58.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.9e-59 231.5 276 44.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 4.9e-58 229.2 289 44.3
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.3e-57 224.9 130 81.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.3e-49 198.4 120 78.3
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 4.9e-42 176.0 105 76.2
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.1e-37 160.6 134 67.9
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.1e-36 156.4 115 68.7
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.6e-35 152.1 112 67.9
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.3e-31 141.4 129 63.6
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.1e-24 115.9 74 73.0
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 9.7e-22 108.6 342 25.1
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 2.6e-19 100.5 149 34.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-16 91.7 57 73.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.1e-16 90.9 56 67.9
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 2.0e-11 74.3 221 26.7
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 6.5e-10 69.3 133 35.3
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 2.1e-08 64.3 142 30.3
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 2.3e-07 60.8 45 64.4
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 3.0e-07 60.5 103 37.9


User provided reference genes

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