Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.9e-267 925.2 460 100.0
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 4.0e-132 475.7 407 60.4
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.2e-123 447.6 383 60.3
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.8e-116 423.7 472 50.2
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 3.1e-108 396.4 450 48.7
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.9e-102 377.1 407 52.3
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 3.3e-102 376.3 441 47.8
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 2.0e-99 367.1 440 46.8
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 8.4e-98 361.7 435 46.4
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 3.0e-95 353.2 440 46.4
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 5.1e-95 352.4 446 45.5
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 3.3e-94 349.7 440 45.7
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 4.3e-94 349.4 437 46.0
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.6e-93 347.4 445 43.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.4e-92 344.4 442 45.9
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-92 344.4 440 45.0
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.4e-92 343.6 440 45.7
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 4.0e-92 342.8 442 46.4
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.2e-91 341.3 433 46.2
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.4e-91 339.7 446 44.2
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.2e-90 337.0 416 46.6
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 1.1e-89 334.7 450 45.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.5e-89 333.6 443 44.5
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 5.5e-89 332.4 448 43.3
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.2e-88 331.3 415 47.0
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.2e-88 331.3 448 44.2
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 6.0e-88 328.9 428 44.4
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.8e-87 327.4 432 43.8
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.8e-87 327.4 441 42.9
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.8e-87 327.4 438 44.3
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.9e-87 326.2 431 45.2
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 5.1e-87 325.9 443 44.7
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.5e-86 324.3 431 44.8
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.3e-85 321.2 432 43.5
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.6e-85 320.9 428 43.9
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 3.7e-85 319.7 428 42.8
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 6.3e-85 318.9 433 42.0
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 6.3e-85 318.9 402 47.8
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 4.1e-84 316.2 435 43.0
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 1.2e-83 314.7 427 42.6
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.5e-83 314.3 408 44.9
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.0e-83 313.9 418 45.5
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 2.0e-83 313.9 444 43.7
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 3.4e-83 313.2 434 40.8
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.5e-83 312.8 420 43.8
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 4.5e-83 312.8 440 40.7
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.0e-82 311.6 439 40.5
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-82 310.8 417 44.1
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.9e-82 310.1 398 45.2
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 2.9e-82 310.1 400 45.5
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 5.0e-82 309.3 430 42.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.5e-82 308.9 417 43.6
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 1.4e-81 307.8 444 43.0
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 4.2e-81 306.2 431 43.2
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 4.2e-81 306.2 412 43.7
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 7.2e-81 305.4 400 44.2
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 9.3e-81 305.1 358 46.1
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-80 303.9 403 43.4
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.1e-80 303.9 431 42.5
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.6e-80 303.1 405 43.7
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 4.6e-80 302.8 444 41.0
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 6.1e-80 302.4 406 43.3
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 6.1e-80 302.4 403 43.2
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 6.1e-80 302.4 395 44.6
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 6.1e-80 302.4 400 45.0
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.0e-79 301.6 400 43.8
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.0e-79 301.6 400 43.8
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.0e-79 301.6 433 42.5
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.3e-79 301.2 454 41.6
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 6.7e-79 298.9 400 43.5
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 8.7e-79 298.5 430 42.6
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-78 298.1 457 40.9
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.1e-78 298.1 406 42.6
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.9e-78 297.4 431 42.5
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 9.7e-78 295.0 416 41.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.3e-77 294.7 406 42.1
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 2.8e-77 293.5 469 39.9
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 3.7e-77 293.1 497 36.6
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 6.3e-77 292.4 398 42.5
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 3.4e-75 286.6 297 54.2
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 3.8e-74 283.1 435 40.2
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 3.8e-74 283.1 393 44.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 8.5e-74 282.0 406 43.1
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.6e-72 277.7 422 40.5
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 2.7e-72 276.9 355 43.4
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.1e-70 271.6 446 40.4
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 3.3e-70 270.0 408 42.2
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 7.4e-70 268.9 430 39.8
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 7.4e-70 268.9 458 37.6
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.7e-70 268.5 378 42.9
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 9.7e-70 268.5 472 39.2
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.7e-69 267.7 443 37.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.2e-69 267.3 392 43.4
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 3.7e-69 266.5 337 43.3
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 6.9e-68 262.3 345 46.1
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.2e-67 261.5 445 37.3
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 7.2e-65 252.3 322 46.3
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.5e-62 244.6 427 36.8
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.8e-61 239.6 384 39.8
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 5.3e-60 236.1 390 40.0
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 2.2e-58 230.7 286 47.9
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-57 228.0 422 37.4
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 1.5e-54 218.0 298 42.3
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.3e-54 216.9 375 37.9
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.1e-52 211.8 254 48.0
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.4e-52 210.7 373 36.5
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-51 208.4 268 47.0
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 2.1e-48 197.6 195 54.4
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 6.1e-48 196.1 288 44.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 2.7e-43 180.6 313 37.7
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 3.5e-43 180.3 518 29.0
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.5e-41 174.9 217 43.3
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.9e-41 174.5 554 27.8
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 5.5e-41 172.9 466 30.0
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 9.5e-41 172.2 230 46.1
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.2e-40 171.8 249 41.4
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 8.0e-40 169.1 497 29.4
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 4.4e-38 163.3 215 45.1
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 3.7e-37 160.2 346 36.1
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 2.3e-34 151.0 245 38.0
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 2.3e-34 151.0 194 39.7
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.1e-33 148.7 432 28.7
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 4.7e-32 143.3 215 39.1
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 8.0e-32 142.5 234 36.8
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.0e-31 142.1 189 44.4
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 7.0e-28 129.4 224 37.9
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 7.0e-28 129.4 224 37.9
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 2.0e-27 127.9 169 45.0
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 2.8e-24 117.5 190 40.5
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 8.9e-23 112.5 163 37.4
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 1.5e-22 111.7 165 41.2
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 3.0e-18 97.4 171 36.8
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 1.1e-17 95.5 160 35.6
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 3.3e-17 94.0 162 33.3
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 5.6e-17 93.2 128 43.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 5.6e-17 93.2 113 44.2
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.3e-15 87.8 138 34.8
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 3.4e-14 84.0 137 39.4
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 4.4e-14 83.6 234 30.8
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 2.2e-13 81.3 69 60.9
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 3.2e-12 77.4 166 30.1
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 4.1e-12 77.0 169 30.8
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 4.1e-12 77.0 85 45.9
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.0e-10 72.4 113 35.4
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.5e-09 68.6 124 33.9
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 9.5e-09 65.9 91 42.9
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 2.0e-06 58.2 84 41.7


User provided reference genes

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