Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 5.3e-136 487.6 239 100.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.5e-82 310.1 244 66.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 3.4e-82 308.9 244 67.2
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.9e-81 305.1 244 66.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.2e-80 300.8 243 69.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 4.5e-79 298.5 199 76.4
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.8e-76 289.3 232 65.5
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 5.2e-75 285.0 209 69.4
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 8.9e-75 284.3 242 62.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.5e-74 283.5 201 69.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.9e-73 279.3 206 69.9
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 6.4e-73 278.1 214 67.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.1e-72 277.3 233 63.5
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.1e-72 277.3 237 61.2
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-72 276.9 236 60.2
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.4e-72 276.9 232 64.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 7.0e-72 274.6 236 63.1
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 9.2e-72 274.2 246 58.9
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.0e-71 273.1 192 70.8
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.7e-71 272.7 233 61.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.5e-71 272.3 203 68.5
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 4.6e-71 271.9 229 61.6
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.3e-70 270.4 236 61.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-70 270.4 238 60.1
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.3e-70 269.6 242 58.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.9e-70 268.9 231 62.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 5.0e-70 268.5 203 66.5
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.6e-70 268.1 234 59.0
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 8.6e-70 267.7 246 58.5
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 8.6e-70 267.7 244 59.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.5e-69 266.2 201 66.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 3.3e-69 265.8 232 64.2
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.3e-69 265.8 235 60.9
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.3e-69 265.8 245 58.8
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 4.3e-69 265.4 235 60.9
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 5.6e-69 265.0 240 59.6
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 7.3e-69 264.6 240 59.6
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 9.5e-69 264.2 240 59.6
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.2e-68 263.8 228 62.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.6e-68 263.5 176 75.6
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.1e-68 263.1 240 57.9
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.1e-68 263.1 244 59.4
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.8e-68 262.7 184 70.7
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.8e-68 262.7 209 63.6
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 8.0e-68 261.2 176 77.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.1e-67 260.8 201 65.2
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.1e-67 260.8 228 61.8
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.4e-67 260.4 231 61.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.3e-67 259.6 208 63.9
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.1e-67 259.2 196 66.8
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 4.0e-67 258.8 174 73.0
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.2e-67 258.5 203 65.5
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.8e-67 258.1 154 84.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 6.8e-67 258.1 189 68.3
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 8.9e-67 257.7 199 66.8
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 8.9e-67 257.7 208 63.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.6e-66 256.1 205 63.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 5.8e-66 255.0 199 66.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 5.8e-66 255.0 236 58.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 2.2e-65 253.1 175 70.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.2e-65 253.1 194 66.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.7e-65 252.3 229 56.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.7e-65 252.3 207 65.7
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 4.9e-65 251.9 274 54.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.1e-64 250.8 244 56.6
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.4e-64 250.4 179 68.2
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.4e-64 249.6 199 63.8
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.2e-64 249.2 238 58.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.1e-64 248.8 150 82.7
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.0e-64 248.1 195 70.8
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 9.2e-64 247.7 177 67.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.2e-63 247.3 236 56.4
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.6e-63 246.9 180 68.3
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 6.0e-63 245.0 176 69.3
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.8e-63 244.6 236 55.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 7.8e-63 244.6 247 56.7
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.0e-62 244.2 179 67.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-62 244.2 176 68.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-62 244.2 179 67.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-62 244.2 176 68.8
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.3e-62 243.8 179 67.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.3e-62 243.8 239 54.0
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.3e-62 243.8 179 66.5
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 183 66.7
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 143 82.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.3e-62 243.0 173 69.4
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.0e-62 242.7 179 65.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 5.0e-62 241.9 172 66.3
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 8.6e-62 241.1 177 68.4
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.1e-61 240.7 142 79.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.1e-61 240.7 154 76.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.5e-61 240.4 239 54.0
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.5e-61 240.4 182 65.4
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.5e-61 240.4 218 60.6
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.9e-61 240.0 144 80.6
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.3e-61 239.2 181 64.1
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 5.6e-61 238.4 175 68.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 5.6e-61 238.4 152 74.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.1e-60 236.5 179 64.2
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.1e-60 236.5 174 66.7
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.8e-60 236.1 175 66.9
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 3.6e-60 235.7 234 53.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 3.6e-60 235.7 234 53.4
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.2e-60 235.0 174 66.7
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.1e-59 234.2 175 66.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.1e-59 234.2 149 75.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.4e-59 233.8 174 65.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.8e-59 233.4 154 71.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.3e-59 233.0 232 53.4
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.3e-59 233.0 180 64.4
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 8.9e-59 231.1 178 62.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.2e-58 230.7 175 64.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 9.9e-58 227.6 176 63.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.9e-57 226.1 174 64.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.7e-57 225.7 208 56.7
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.3e-57 224.6 208 56.2
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.4e-56 223.8 163 68.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.4e-56 221.9 173 63.6
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.0e-54 216.1 161 64.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.9e-53 213.4 172 59.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-53 212.2 186 58.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.4e-51 207.2 120 80.8
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 8.9e-51 204.5 153 66.7
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.0e-50 203.4 195 57.9
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.1e-48 197.6 140 64.3
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 9.2e-48 194.5 194 55.2
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.3e-46 190.7 143 60.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.1e-46 188.7 140 60.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.3e-45 185.7 147 59.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 5.6e-45 185.3 245 46.9
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.8e-43 180.3 168 61.3
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.5e-42 177.2 139 56.1
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 4.4e-42 175.6 174 54.6
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 3.8e-41 172.6 244 45.9
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.4e-40 170.6 135 63.7
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 7.1e-40 168.3 136 62.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.9e-37 160.2 232 44.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.3e-35 152.1 169 54.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 5.3e-35 152.1 144 58.3
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.2e-33 146.7 144 56.2
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-32 143.3 188 44.1
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 9.3e-32 141.4 126 60.3
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-26 124.4 161 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.8e-22 110.5 79 63.3
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.1e-20 103.6 106 53.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.8e-20 103.2 145 38.6
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.2e-17 93.6 144 34.7
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 3.5e-15 86.3 130 33.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 7.9e-15 85.1 148 34.5
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.3e-13 79.3 152 28.9
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.4e-11 74.3 171 28.7
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.4e-11 73.6 122 31.1
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.4e-11 73.6 83 50.6
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.6e-10 70.1 163 29.4
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 3.2e-08 63.2 118 39.0


User provided reference genes

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