Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.0e-185 651.7 337 100.0
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 7.5e-128 461.1 263 88.6
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.2e-127 459.5 263 89.0
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.4e-126 456.8 263 89.0
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.1e-123 447.2 285 80.7
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.1e-114 416.4 265 79.6
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 2.1e-114 416.4 265 79.6
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 4.0e-113 412.1 283 77.4
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 7.5e-112 407.9 263 81.0
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.2e-111 406.4 265 80.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.9e-111 405.2 266 80.8
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 8.3e-111 404.4 267 78.3
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.1e-110 404.1 266 80.5
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 4.1e-110 402.1 313 70.3
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 5.4e-110 401.7 267 78.7
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 9.2e-110 401.0 267 78.7
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.6e-109 400.2 266 80.1
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-109 399.8 268 79.5
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 2.0e-109 399.8 270 79.3
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 3.5e-109 399.1 260 79.2
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 3.5e-109 399.1 291 71.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 5.9e-109 398.3 265 78.5
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 5.9e-109 398.3 264 79.5
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 5.9e-109 398.3 289 73.7
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.0e-108 397.5 265 77.7
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.3e-108 397.1 272 76.1
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 2.3e-108 396.4 291 73.9
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 2.3e-108 396.4 270 75.9
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 3.9e-108 395.6 294 73.5
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 5.0e-108 395.2 266 75.9
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 6.6e-108 394.8 265 78.5
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 8.6e-108 394.4 265 76.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 8.6e-108 394.4 266 76.3
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 8.6e-108 394.4 266 77.1
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.5e-107 393.7 288 72.2
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.9e-107 393.3 266 76.3
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 5.6e-107 391.7 266 77.4
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 5.6e-107 391.7 263 76.8
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 5.6e-107 391.7 270 78.1
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 5.6e-107 391.7 266 74.8
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 7.3e-107 391.3 270 79.6
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 7.3e-107 391.3 266 74.8
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 2.1e-106 389.8 265 77.0
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 2.1e-106 389.8 269 75.5
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.8e-106 389.4 265 77.7
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 4.7e-106 388.7 266 74.4
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 6.2e-106 388.3 265 75.8
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 8.0e-106 387.9 266 73.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.0e-105 387.5 266 78.2
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.0e-105 387.5 266 74.4
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 3.1e-105 386.0 265 76.6
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 9.8e-104 380.9 268 76.1
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 9.8e-104 380.9 267 76.4
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.3e-103 380.6 266 76.7
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.7e-103 379.0 282 73.0
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-102 377.5 265 76.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.4e-102 377.1 267 74.9
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.4e-102 377.1 266 74.4
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.4e-102 376.3 268 74.6
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.1e-102 375.6 268 74.3
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 4.1e-102 375.6 268 75.0
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 7.0e-102 374.8 283 70.7
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 9.2e-102 374.4 268 72.8
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 9.2e-102 374.4 272 73.9
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 9.2e-102 374.4 272 73.9
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 9.2e-102 374.4 272 73.9
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 9.2e-102 374.4 297 68.4
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.2e-101 374.0 272 74.6
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.7e-101 372.9 266 74.4
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.5e-101 372.5 266 75.6
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 4.6e-101 372.1 269 75.1
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 6.0e-101 371.7 267 72.3
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.0e-100 370.9 268 73.1
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.3e-100 370.5 251 75.3
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.3e-100 370.5 265 74.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.7e-100 370.2 265 74.0
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.7e-100 370.2 283 71.0
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.3e-100 369.8 208 89.4
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.0e-100 369.4 241 77.2
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 5.0e-100 368.6 267 73.0
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 6.6e-100 368.2 266 70.7
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.9e-99 366.7 269 70.6
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.6e-99 365.2 266 70.7
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 9.5e-99 364.4 235 81.3
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-96 357.5 268 68.7
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.2e-96 357.5 268 68.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 4.4e-96 355.5 269 68.0
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 9.8e-96 354.4 266 68.8
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 3.2e-94 349.4 273 67.0
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 3.3e-91 339.3 307 60.9
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 7.3e-91 338.2 265 69.4
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 7.3e-91 338.2 270 67.4
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.2e-90 337.4 272 66.9
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 2.1e-90 336.7 265 67.9
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 6.8e-89 331.6 276 63.8
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 4.4e-88 328.9 270 64.4
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 7.6e-88 328.2 273 62.6
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 6.4e-87 325.1 266 67.3
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 4.6e-85 318.9 235 69.8
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.3e-83 312.8 217 76.5
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 4.4e-80 302.4 226 68.1
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 4.9e-79 298.9 269 64.3
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 1.0e-76 291.2 251 63.3
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.3e-76 290.0 253 60.1
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 5.1e-76 288.9 267 64.0
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 4.8e-74 282.3 238 65.1
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 2.5e-67 260.0 180 72.2
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 3.6e-66 256.1 183 73.8
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.1e-62 244.6 270 51.9
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 2.4e-62 243.4 206 60.7
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.7e-61 240.0 172 70.3
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 4.3e-59 232.6 228 57.5
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 7.6e-56 221.9 178 67.4
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 6.7e-44 182.2 184 59.8
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.7e-43 179.1 264 47.7
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 6.9e-41 172.2 150 61.3
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 7.0e-25 119.0 113 55.8
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 6.5e-23 112.5 81 67.9
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 4.8e-18 96.3 118 49.2
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.1e-17 95.1 83 63.9
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 5.3e-17 92.8 118 49.2
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.6e-08 64.7 66 54.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 5.9e-08 62.8 66 54.5
CDE06G0370 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.5e-06 57.4 69 44.9


User provided reference genes

Program Settings