Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.3e-256 887.9 450 100.0
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.8e-79 299.7 453 42.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.8e-79 299.7 460 42.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 7.5e-67 258.8 452 39.6
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 3.0e-47 193.7 433 34.6
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.9e-47 193.4 334 37.1
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.1e-46 191.8 450 36.7
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 3.6e-45 186.8 325 38.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 6.2e-45 186.0 328 38.7
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 3.4e-43 180.3 323 38.4
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 7.1e-41 172.6 449 32.7
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 9.3e-41 172.2 337 37.4
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.6e-40 171.4 285 38.2
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.6e-40 169.9 331 37.2
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.6e-40 169.9 324 35.8
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.3e-39 168.3 335 35.8
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.3e-39 168.3 318 36.2
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.3e-39 168.3 381 33.3
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.7e-39 167.9 339 35.7
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.1e-38 165.2 424 31.6
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.5e-38 164.9 326 36.8
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.5e-38 164.1 328 36.3
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.5e-38 164.1 207 44.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 9.6e-38 162.2 317 36.6
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 9.6e-38 162.2 307 37.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.6e-37 161.4 342 37.1
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 6.2e-37 159.5 189 46.6
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.1e-36 158.7 363 33.9
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 2.4e-36 157.5 198 45.5
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.0e-36 156.8 198 44.4
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 9.0e-36 155.6 182 46.7
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.2e-35 155.2 203 45.8
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.2e-35 155.2 334 34.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.5e-35 154.8 339 34.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.0e-35 154.5 329 34.7
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.8e-35 152.9 178 48.3
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.3e-34 151.8 201 44.3
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.7e-34 151.4 198 44.4
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 2.9e-34 150.6 184 46.7
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.9e-34 150.6 198 45.5
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.9e-34 149.8 191 45.0
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.9e-34 149.8 325 35.4
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.1e-33 148.7 198 43.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 4.2e-33 146.7 214 40.2
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 4.2e-33 146.7 174 45.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 5.4e-33 146.4 182 42.3
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 9.3e-33 145.6 362 32.6
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.6e-32 144.8 233 39.5
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 3.5e-32 143.7 204 42.2
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 3.5e-32 143.7 204 42.2
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 6.0e-32 142.9 222 41.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.0e-31 142.1 179 45.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.0e-31 142.1 179 45.3
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.3e-31 141.7 153 49.7
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.3e-31 141.7 322 32.9
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.7e-31 141.4 422 30.3
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 2.3e-31 141.0 277 35.4
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.5e-30 138.3 249 37.8
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.5e-30 138.3 181 45.9
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.5e-30 137.5 190 42.1
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 3.3e-30 137.1 187 42.2
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 7.3e-30 136.0 249 37.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 7.3e-30 136.0 249 37.3
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 7.3e-30 136.0 315 36.2
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 9.6e-30 135.6 254 37.4
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 9.6e-30 135.6 339 32.7
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 9.6e-30 135.6 222 37.4
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 9.6e-30 135.6 163 46.6
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.3e-29 135.2 148 48.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.3e-29 135.2 419 28.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.6e-29 134.8 326 31.6
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.1e-29 134.4 266 35.0
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.6e-29 133.7 193 42.0
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 4.8e-29 133.3 325 32.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.1e-29 132.5 322 31.1
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-28 132.1 142 47.2
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-28 132.1 142 47.2
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.1e-28 132.1 142 47.2
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.8e-28 131.3 156 46.2
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.8e-28 131.3 328 31.1
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.8e-28 131.3 143 49.0
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 2.4e-28 131.0 322 32.0
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 3.1e-28 130.6 133 48.1
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.1e-28 130.6 135 51.1
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 4.0e-28 130.2 142 46.5
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 5.3e-28 129.8 164 43.3
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 9.0e-28 129.0 142 47.9
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 9.0e-28 129.0 172 42.4
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.0e-27 127.9 219 37.4
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.0e-27 127.9 235 42.1
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 2.6e-27 127.5 435 29.9
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.6e-27 127.5 164 43.9
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.4e-27 127.1 211 37.4
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.4e-27 127.1 165 44.8
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.5e-27 126.7 186 39.2
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 4.5e-27 126.7 160 45.0
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.8e-27 126.3 397 30.5
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.6e-27 125.9 125 52.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.2e-26 124.4 187 41.7
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.9e-26 124.0 423 29.1
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 8.4e-26 122.5 140 47.9
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.1e-25 122.1 289 31.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.1e-25 122.1 174 40.2
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.4e-25 121.7 268 34.7
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 7.1e-25 119.4 194 36.6
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 9.3e-25 119.0 218 36.2
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 9.3e-25 119.0 297 34.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-24 118.6 262 32.1
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.6e-24 116.7 445 27.6
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 3.0e-23 114.0 112 50.9
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.7e-23 112.8 163 41.1
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 6.7e-23 112.8 112 50.0
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 6.7e-23 112.8 182 36.8
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 8.7e-23 112.5 238 33.6
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.1e-22 112.1 112 50.0
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.1e-22 112.1 224 34.8
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.5e-22 111.7 112 50.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.5e-22 111.7 112 50.0
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.9e-22 111.3 275 31.6
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.3e-22 110.5 398 27.9
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 4.3e-22 110.2 192 34.9
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 6.2e-21 106.3 118 50.8
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 1.4e-20 105.1 118 45.8
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 4.5e-19 100.1 350 29.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 5.8e-19 99.8 143 39.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.6e-19 99.4 186 36.0
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 4.9e-18 96.7 109 45.0
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-17 94.7 93 51.6
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.5e-17 94.4 112 42.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.3e-15 87.8 135 38.5
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.1e-14 85.5 108 41.7
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.3e-14 83.6 99 45.5
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 9.6e-14 82.4 182 36.3
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.1e-12 79.0 224 28.6
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.4e-11 73.9 103 40.8
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 3.8e-10 70.5 170 33.5
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 9.3e-09 65.9 226 26.1
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.8e-07 61.6 115 36.5
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.3e-07 61.2 82 41.5


User provided reference genes

Program Settings