Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.5e-116 422.9 217 100.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.2e-78 297.0 181 85.6
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.5e-68 262.7 185 76.2
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.5e-68 262.7 185 76.2
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 2.1e-67 259.6 172 79.1
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.0e-65 253.1 169 78.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 8.4e-64 247.7 169 77.5
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-61 240.7 172 75.0
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.5e-60 236.9 166 76.5
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.6e-60 234.2 185 70.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.1e-59 233.0 171 73.7
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.4e-58 230.3 179 72.1
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.4e-58 230.3 174 71.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.4e-58 230.3 179 72.1
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.4e-58 230.3 173 72.3
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 4.0e-58 228.8 180 68.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 8.9e-58 227.6 188 67.0
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.9e-58 227.6 178 70.2
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.0e-57 226.5 187 65.8
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.6e-57 226.1 177 70.6
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.4e-57 225.7 181 71.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 4.4e-57 225.3 176 71.6
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.8e-57 224.9 174 69.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.8e-57 224.9 174 69.0
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.8e-57 224.9 174 69.0
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 7.6e-57 224.6 182 69.8
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 7.6e-57 224.6 187 69.0
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 7.6e-57 224.6 187 69.0
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.3e-56 223.8 178 65.2
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.7e-56 223.4 179 65.9
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.7e-56 223.4 173 70.5
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 2.9e-56 222.6 173 69.9
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 3.8e-56 222.2 173 70.5
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.8e-56 222.2 175 70.3
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.4e-56 221.1 167 72.5
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.9e-55 219.9 175 70.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.9e-55 219.9 167 71.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 5.4e-55 218.4 170 71.8
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 5.4e-55 218.4 171 67.3
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 7.1e-55 218.0 177 67.2
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 7.1e-55 218.0 191 64.9
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.1e-55 218.0 177 70.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 9.3e-55 217.6 177 67.2
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-54 217.2 179 66.5
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-54 217.2 185 64.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.1e-54 216.5 171 69.6
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.1e-54 216.5 175 66.9
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.1e-54 216.5 175 71.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.7e-54 216.1 184 64.7
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 3.5e-54 215.7 179 67.0
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 3.5e-54 215.7 204 60.8
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 3.5e-54 215.7 175 66.9
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 4.6e-54 215.3 175 66.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 6.0e-54 214.9 168 68.5
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.0e-53 214.2 191 67.0
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.0e-53 214.2 172 69.2
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.3e-53 213.8 175 70.9
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.7e-53 213.4 167 67.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.3e-53 213.0 178 66.3
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.3e-53 213.0 178 66.3
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.3e-53 213.0 178 66.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.0e-53 212.6 187 63.6
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.0e-53 212.6 187 63.6
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.9e-53 212.2 176 67.0
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 5.1e-53 211.8 203 61.1
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.6e-53 211.5 160 71.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 8.7e-53 211.1 190 61.6
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.1e-52 210.7 169 71.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.9e-52 209.9 171 66.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.5e-52 209.5 168 65.5
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 4.3e-52 208.8 180 65.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.3e-52 208.8 171 66.7
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.3e-51 207.2 178 66.3
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.6e-51 206.8 178 66.3
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.1e-51 206.5 174 67.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.1e-51 206.5 135 77.8
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 4.8e-51 205.3 176 65.3
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 4.8e-51 205.3 171 66.1
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 4.8e-51 205.3 174 66.7
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 6.2e-51 204.9 179 65.4
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.4e-50 203.8 176 61.9
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.8e-50 203.4 177 65.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.1e-50 202.6 176 64.8
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 4.0e-50 202.2 175 66.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 4.0e-50 202.2 176 65.9
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 4.0e-50 202.2 191 60.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 6.9e-50 201.4 153 71.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-49 200.3 205 57.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-49 199.9 184 58.2
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.6e-49 199.5 169 65.1
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.4e-49 199.1 169 64.5
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 4.5e-49 198.7 185 61.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 7.6e-49 198.0 166 61.4
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.7e-48 196.8 169 63.9
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-48 196.8 173 64.7
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.2e-48 196.4 190 60.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.2e-48 196.4 171 63.2
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.8e-48 195.7 168 63.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.4e-47 193.7 168 62.5
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.4e-47 193.7 154 71.4
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.9e-47 193.4 149 67.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.4e-47 193.0 178 63.5
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.4e-47 193.0 178 63.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 3.2e-47 192.6 145 67.6
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.6e-46 190.3 183 60.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.7e-46 189.5 177 61.6
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.3e-45 187.2 185 60.5
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.3e-45 186.4 179 60.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.7e-45 184.9 120 76.7
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 4.3e-44 182.2 176 57.4
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.3e-43 180.6 191 57.6
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.0e-41 173.3 157 63.1
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 5.8e-41 171.8 168 59.5
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 3.2e-39 166.0 132 65.2
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.6e-38 163.7 145 64.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.7e-38 162.9 169 58.0
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.3e-36 156.0 136 64.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 4.3e-36 155.6 91 83.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.3e-35 154.1 195 48.2
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.1e-35 153.3 138 64.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 2.8e-35 152.9 190 46.8
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.5e-33 145.6 131 59.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.4e-31 140.6 101 70.3
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 9.3e-31 137.9 123 58.5
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 3.5e-30 136.0 111 63.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.3e-29 134.0 103 66.0
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 3.0e-29 132.9 103 65.0
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.9e-29 132.5 113 61.9
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.9e-29 132.5 115 64.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.5e-28 130.6 73 89.0
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.1e-26 124.4 116 53.4
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.1e-26 124.4 113 60.2
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.8e-26 123.6 103 64.1
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.0e-25 120.2 175 46.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 5.9e-25 118.6 121 55.4
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.2e-24 116.7 109 58.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 6.5e-24 115.2 104 55.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-22 110.9 93 63.4
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.9e-22 108.2 102 54.9
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.9e-21 105.9 108 55.6
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 8.7e-21 104.8 98 55.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.9e-20 103.6 96 65.6
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.2e-19 100.1 80 60.0
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.4e-18 96.7 122 45.1
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 5.3e-18 95.5 71 62.0
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.3e-16 90.9 98 45.9
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.2e-16 90.1 64 73.4
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.2e-16 90.1 92 56.5
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 2.9e-16 89.7 98 53.1
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.1e-15 87.8 94 52.1
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-15 87.8 67 68.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 3.3e-12 76.3 129 34.1


User provided reference genes

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