Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 3.3e-173 611.7 327 100.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 7.6e-93 344.7 326 64.1
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.9e-92 342.8 327 63.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.5e-64 250.8 330 50.3
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.5e-64 250.8 311 53.1
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.9e-62 241.9 322 49.1
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 5.8e-61 238.8 328 50.6
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.2e-58 231.1 321 49.8
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 6.1e-58 228.8 326 51.8
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.5e-56 224.2 310 47.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.5e-56 224.2 329 47.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.5e-56 223.4 314 47.8
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 3.3e-56 223.0 310 49.0
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 9.7e-56 221.5 313 47.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 6.3e-55 218.8 260 51.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.4e-54 217.6 313 48.2
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.4e-54 216.9 304 47.7
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 3.1e-54 216.5 329 45.6
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.0e-53 213.8 309 47.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.6e-53 213.4 309 47.9
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.7e-52 210.7 260 49.2
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 5.0e-52 209.1 329 48.0
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 8.5e-52 208.4 325 46.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 8.5e-52 208.4 308 45.1
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.1e-51 208.0 215 56.7
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.1e-51 208.0 323 46.4
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 3.2e-51 206.5 331 45.3
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 4.2e-51 206.1 264 51.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 9.4e-51 204.9 306 45.1
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.6e-50 204.1 303 48.5
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.7e-50 203.4 245 52.2
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 3.6e-50 203.0 257 52.5
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.0e-49 201.4 245 52.2
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 2.3e-49 200.3 237 54.0
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.9e-49 199.5 307 47.6
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 5.1e-49 199.1 331 44.4
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 5.1e-49 199.1 257 50.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 5.1e-49 199.1 305 45.2
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 8.8e-49 198.4 315 47.0
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.1e-48 198.0 265 50.9
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.1e-48 198.0 216 56.9
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 2.5e-48 196.8 310 45.8
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 5.7e-48 195.7 220 52.7
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 7.4e-48 195.3 235 53.2
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.4e-48 195.3 226 53.1
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 9.7e-48 194.9 220 54.1
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.7e-47 194.1 325 45.2
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.2e-47 193.7 221 52.9
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 2.8e-47 193.4 235 51.5
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 3.7e-47 193.0 333 44.4
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 6.3e-47 192.2 217 52.1
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 6.3e-47 192.2 325 44.9
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.1e-46 191.4 256 49.2
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.4e-46 190.3 161 73.3
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.1e-46 189.9 237 54.0
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.1e-46 189.9 229 50.2
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 4.1e-46 189.5 219 52.5
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 4.1e-46 189.5 219 52.5
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 5.3e-46 189.1 222 56.3
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.3e-46 189.1 222 56.3
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 5.3e-46 189.1 250 48.4
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.9e-46 188.7 200 59.0
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 6.9e-46 188.7 210 56.7
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 6.9e-46 188.7 285 46.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 9.1e-46 188.3 211 53.1
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 3.4e-45 186.4 248 47.2
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 3.4e-45 186.4 248 47.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 5.9e-45 185.7 223 53.4
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 7.7e-45 185.3 258 48.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 7.7e-45 185.3 211 53.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.0e-44 184.9 255 45.5
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.3e-44 184.5 223 52.9
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.7e-44 184.1 255 45.5
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.5e-44 182.2 229 54.6
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 8.5e-44 181.8 237 48.1
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 8.5e-44 181.8 223 49.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.1e-43 181.4 229 50.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.4e-43 181.0 281 45.9
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.9e-43 180.6 223 49.3
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.5e-43 180.3 243 50.2
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.2e-43 179.9 243 47.7
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 4.2e-43 179.5 208 52.9
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 5.5e-43 179.1 213 52.1
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.5e-43 179.1 201 55.2
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.4e-43 178.3 202 54.0
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-42 177.9 223 49.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.2e-42 177.9 214 51.4
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.6e-42 177.6 225 49.8
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.1e-42 177.2 205 52.7
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 2.1e-42 177.2 245 50.2
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.7e-42 176.0 208 52.9
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 6.1e-42 175.6 286 44.1
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 7.9e-42 175.3 193 56.5
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 7.9e-42 175.3 256 48.0
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.0e-41 174.9 252 49.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 8.8e-41 171.8 288 41.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.5e-40 171.0 165 61.2
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.0e-40 170.6 151 64.9
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 7.4e-40 168.7 179 56.4
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 4.8e-39 166.0 191 56.5
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 6.3e-39 165.6 257 44.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.1e-38 164.9 242 46.3
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.8e-38 164.1 203 52.2
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.1e-38 163.3 246 45.5
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 5.3e-38 162.5 224 46.4
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 7.0e-38 162.2 172 55.8
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.2e-37 161.4 199 52.8
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.5e-37 161.0 325 39.7
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.2e-36 157.1 222 45.9
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.5e-35 153.7 192 53.6
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 7.2e-35 152.1 217 46.1
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 7.2e-35 152.1 254 37.8
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 2.1e-34 150.6 286 43.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 2.7e-34 150.2 250 42.4
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 4.0e-33 146.4 308 37.3
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 2.0e-32 144.1 108 72.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.6e-32 143.7 141 58.2
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 5.7e-32 142.5 147 55.8
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 3.7e-31 139.8 154 57.8
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.1e-30 138.3 155 54.8
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 4.1e-30 136.3 204 46.6
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 3.5e-29 133.3 292 38.7
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.5e-29 133.3 143 56.6
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 5.9e-29 132.5 157 50.3
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.0e-28 131.7 107 71.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 2.2e-28 130.6 229 41.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 2.2e-28 130.6 190 44.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.5e-24 117.9 87 73.6
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.4e-24 116.7 199 42.2
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.8e-24 115.2 238 40.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-21 108.2 135 48.9
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.5e-21 106.7 117 53.8
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 9.4e-19 98.6 152 46.1
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.6e-18 97.8 103 54.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.4e-17 94.7 152 39.5
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.8e-15 87.0 98 53.1
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.4e-14 84.7 177 34.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.4e-14 84.7 215 32.6
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 2.4e-14 84.0 222 35.1
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 7.0e-14 82.4 94 58.5
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-12 77.8 61 70.5
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.3e-12 77.4 85 58.8
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.5e-11 73.9 112 44.6
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.6e-11 72.8 113 46.0
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 6.1e-10 69.3 171 33.9
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-07 61.6 49 69.4
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.2e-07 60.8 46 71.7


User provided reference genes

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