Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 8.5e-125 450.3 218 100.0
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.5e-108 396.4 218 87.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.5e-108 395.6 218 87.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.5e-105 386.3 219 82.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.2e-104 382.5 219 82.6
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.4e-103 379.8 218 83.5
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 3.2e-103 378.6 219 81.3
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.1e-103 378.3 219 81.3
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 5.4e-103 377.9 219 80.4
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.7e-102 375.6 219 81.3
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.5e-102 375.2 219 80.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.3e-101 372.5 219 80.4
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.0e-101 371.3 219 79.9
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.0e-101 371.3 219 79.9
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 7.3e-100 367.5 220 80.5
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.6e-99 366.3 219 77.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 2.8e-99 365.5 219 79.0
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.2e-99 364.4 219 79.9
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.2e-99 364.4 219 80.8
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.1e-98 362.1 219 78.5
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.9e-98 360.5 219 78.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.0e-97 359.4 219 77.2
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 4.4e-97 358.2 220 78.2
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 4.4e-97 358.2 221 79.2
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.4e-97 358.2 219 78.1
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 7.5e-97 357.5 218 78.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 7.5e-97 357.5 220 78.2
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 9.8e-97 357.1 219 78.1
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.8e-97 357.1 221 78.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.3e-96 356.7 221 78.3
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 77.6
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.3e-96 356.7 221 79.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.2e-96 355.9 219 77.2
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.2e-96 355.9 219 76.7
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.9e-96 354.8 221 78.3
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.9e-96 354.8 220 78.2
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.9e-96 354.8 220 77.3
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.4e-96 354.4 220 77.7
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.4e-96 354.4 219 77.6
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 6.4e-96 354.4 219 77.6
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 8.3e-96 354.0 219 76.3
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.1e-95 353.6 219 77.6
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 1.4e-95 353.2 221 78.3
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 2.4e-95 352.4 219 74.4
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 3.2e-95 352.1 219 76.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.2e-95 352.1 220 76.8
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.4e-95 351.3 222 77.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.6e-94 348.2 192 87.0
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 7.8e-94 347.4 221 74.2
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 73.8
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 73.3
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.9e-93 345.1 218 74.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 5.0e-93 344.7 220 74.5
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 6.6e-93 344.4 218 74.3
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.5e-92 342.4 218 74.3
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.3e-92 342.0 218 74.3
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 3.3e-92 342.0 218 74.3
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.2e-91 340.1 219 76.3
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.6e-91 339.7 219 75.3
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.1e-91 339.3 209 78.9
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.6e-91 338.6 238 71.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 6.2e-91 337.8 218 72.9
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.4e-90 336.7 218 74.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.8e-90 336.3 220 73.2
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.2e-89 333.6 193 80.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.2e-89 333.6 231 69.3
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 2.6e-89 332.4 228 71.1
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 4.4e-89 331.6 220 72.3
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 9.8e-89 330.5 220 71.8
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 8.3e-88 327.4 220 71.4
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.1e-87 327.0 220 71.4
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.9e-87 326.2 220 71.4
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 5.4e-87 324.7 220 71.8
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.6e-86 323.2 219 70.3
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.6e-86 323.2 193 79.8
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.7e-86 322.4 196 78.6
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 3.5e-86 322.0 196 79.1
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 6.0e-86 321.2 199 78.9
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.3e-85 320.1 220 71.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 3.9e-85 318.5 202 75.7
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 69.7
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 9.5e-84 313.9 194 78.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.1e-83 312.8 194 77.8
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 4.7e-83 311.6 219 67.1
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 8.1e-83 310.8 299 56.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 8.1e-83 310.8 218 65.6
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.3e-82 309.3 220 70.0
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.3e-82 309.3 220 70.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 4.0e-82 308.5 220 68.2
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 4.0e-82 308.5 220 68.2
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.2e-82 308.1 198 74.7
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.2e-82 308.1 195 75.9
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 2.0e-81 306.2 194 75.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 7.6e-81 304.3 220 67.3
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 9.9e-81 303.9 222 67.6
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 9.9e-81 303.9 222 67.6
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.7e-80 303.1 220 66.8
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.2e-80 302.8 222 67.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 2.2e-80 302.8 194 75.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 2.9e-80 302.4 221 67.0
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.9e-80 302.4 212 68.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 3.8e-80 302.0 221 67.4
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.4e-79 300.1 219 67.1
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 3.2e-79 298.9 220 66.8
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.1e-79 298.5 203 70.4
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 4.6e-78 295.0 218 63.3
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.5e-76 290.0 196 72.4
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.9e-76 289.7 191 71.2
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.9e-76 289.7 288 54.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 9.6e-76 287.3 194 73.2
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.6e-75 285.4 209 66.5
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.1e-75 284.3 221 66.1
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 8.1e-75 284.3 182 74.7
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.7e-72 276.6 212 61.8
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 4.9e-72 275.0 212 61.8
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 9.3e-71 270.8 219 62.1
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-69 266.9 225 62.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-69 266.9 225 62.2
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.5e-68 263.5 194 70.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.9e-68 263.1 178 73.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 4.3e-68 261.9 168 75.6
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 5.6e-68 261.5 220 62.3
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.6e-67 260.0 171 70.8
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 6.2e-67 258.1 221 59.3
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.8e-66 256.5 221 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.1e-66 255.8 194 63.4
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.2e-64 249.6 157 75.8
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.8e-64 248.8 163 74.2
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.9e-63 246.5 221 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.4e-63 245.0 221 53.4
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 6.7e-61 238.0 195 61.0
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.9e-60 236.5 167 67.7
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 4.8e-51 205.3 189 58.7
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.2e-48 196.4 160 58.8
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.9e-48 195.3 218 45.4
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.6e-43 180.3 93 87.1
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.1e-43 179.9 148 58.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 2.1e-38 163.3 223 39.0
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 5.1e-37 158.7 247 42.5
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 4.3e-36 155.6 95 77.9
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 4.1e-34 149.1 228 37.7
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.1e-31 141.0 84 79.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.6e-30 137.1 217 35.5
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 6.1e-30 135.2 84 73.8
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.1e-26 121.3 139 46.8
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.5e-25 119.0 92 63.0
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.9e-15 87.0 83 61.4
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.0e-12 77.0 141 38.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 3.1e-10 69.7 204 27.5


User provided reference genes

Program Settings