Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 0.0e+00 2555.4 1301 100.0
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1118.6 1267 51.7
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.5e-304 1049.3 1252 49.8
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.6e-287 993.4 1206 49.3
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 4.7e-287 991.9 1264 46.8
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 2.7e-266 922.9 1284 43.5
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 2.9e-260 902.9 1290 43.3
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 7.1e-259 898.3 1347 40.9
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 1.7e-257 893.6 1320 41.0
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 1.7e-257 893.6 1320 41.4
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 4.3e-256 889.0 1332 40.8
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 1.2e-255 887.5 1320 41.4
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 3.1e-254 882.9 1303 42.4
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 4.0e-254 882.5 1303 42.4
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 1.2e-253 880.9 1315 40.6
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 3.4e-253 879.4 1318 40.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.9e-251 873.6 1286 43.6
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.0e-249 867.8 1350 41.1
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 3.9e-249 865.9 1303 42.0
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 5.1e-249 865.5 1317 40.8
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 4.7e-247 859.0 1296 40.7
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 1.5e-245 854.0 1323 40.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 2.2e-244 850.1 1315 40.1
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 3.8e-244 849.4 1304 41.8
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 6.4e-244 848.6 1314 40.9
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 7.1e-243 845.1 1320 39.5
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.0e-241 841.3 1315 40.4
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.3e-240 836.3 1248 40.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 8.1e-239 831.6 1332 40.1
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.8e-238 830.5 1332 39.9
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.4e-238 830.1 1317 40.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 4.0e-238 829.3 1319 40.4
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.3e-238 828.9 1331 39.7
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.0e-237 827.0 1329 39.6
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 2.2e-236 823.5 1218 41.6
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.9e-236 823.2 1209 42.0
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 5.4e-235 818.9 1306 38.7
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 3.4e-229 799.7 1309 40.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 2.5e-227 793.5 1306 38.4
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 3.2e-227 793.1 1256 38.9
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 5.5e-227 792.3 1193 41.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.6e-226 790.8 1282 39.0
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 3.5e-226 789.6 1282 38.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 2.5e-224 783.5 1430 36.6
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 8.2e-223 778.5 1318 37.8
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 4.9e-220 769.2 1264 38.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.1e-218 763.8 1285 37.7
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 4.6e-218 762.7 1277 38.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.3e-217 761.1 1156 39.9
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 3.0e-217 760.0 1322 39.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.0e-217 760.0 1320 36.8
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 5.1e-217 759.2 1340 39.3
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.1e-216 758.1 1315 37.6
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.3e-215 754.6 1280 37.3
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.7e-215 753.1 1313 36.6
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.1e-214 751.5 1228 38.8
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.6e-213 746.9 1283 36.9
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 2.6e-213 746.9 1280 37.5
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 4.5e-213 746.1 1317 37.1
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.4e-211 741.1 1306 36.5
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 7.2e-211 738.8 1180 40.1
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.2e-210 738.0 1245 38.7
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.1e-210 737.3 1279 37.2
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.1e-210 737.3 1282 37.1
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.8e-209 731.9 1272 36.9
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.5e-208 730.3 1350 37.0
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 3.3e-208 729.9 1294 37.6
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.7e-207 727.6 1283 38.7
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 2.8e-207 726.9 1287 36.8
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 1.2e-205 721.5 1313 36.5
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.2e-205 721.5 1282 36.7
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 5.0e-204 716.1 1296 37.5
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 9.4e-203 711.8 1282 36.5
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 3.2e-195 686.8 1262 36.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 5.5e-195 686.0 1313 35.1
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 7.2e-195 685.6 1183 38.0
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 9.4e-195 685.3 1261 36.7
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 3.7e-191 673.3 1291 36.5
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 7.2e-187 659.1 1258 35.7
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.7e-183 646.7 1309 35.8
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.4e-174 618.2 1238 34.7
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.5e-171 608.2 1046 37.4
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 8.3e-167 592.4 1317 33.4
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.1e-163 582.0 1222 33.8
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.1e-154 551.2 921 37.2
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 3.6e-154 550.4 1055 36.0
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 3.7e-151 540.4 1159 33.9
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 6.6e-148 529.6 1187 33.3
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 7.1e-142 509.6 683 44.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.7e-140 505.0 693 45.2
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 3.6e-138 497.3 1202 31.9
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.4e-134 485.3 659 44.6
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 5.1e-124 450.3 1215 31.0
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.6e-122 445.3 705 43.4
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.3e-116 425.6 680 41.2
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.9e-107 395.2 702 40.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 9.0e-105 386.3 608 38.5
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.9e-102 378.6 579 39.4
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.7e-98 364.4 756 33.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.7e-93 348.2 689 32.4
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.6e-93 347.8 547 41.0
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.5e-91 342.4 769 33.2
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 8.2e-90 336.7 653 37.8
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 6.9e-89 333.6 1044 32.5
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 4.7e-85 320.9 809 31.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 9.1e-81 306.6 366 43.2
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.7e-74 284.6 817 27.7
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.0e-68 264.6 641 32.9
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 8.8e-60 236.9 347 38.9
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.3e-58 230.7 302 45.4
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.8e-57 229.2 481 30.8
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 9.5e-54 216.9 962 24.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 4.4e-51 208.0 295 44.1
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.6e-37 162.9 546 31.9
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 5.2e-28 131.3 516 30.2
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 2.8e-21 109.0 260 27.3
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 5.2e-20 104.8 376 25.5
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 2.9e-18 99.0 547 29.1
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.9e-18 98.2 547 29.1
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 4.9e-18 98.2 123 43.1
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.3e-15 90.1 537 25.5
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.1e-14 87.0 120 45.0
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.1e-14 87.0 210 34.8
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 2.5e-14 85.9 425 28.9
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.5e-14 85.9 517 26.5
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.3e-14 85.5 408 22.5
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 4.3e-14 85.1 462 29.4
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 4.3e-14 85.1 462 29.4
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.6e-13 83.2 144 34.0
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.6e-13 82.0 451 28.4
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 4.8e-13 81.6 521 25.7
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.1e-12 80.5 300 23.3
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 1.7e-10 73.2 541 24.8
Ah.03g144300 Amaranthus hybridus HOM05D001096 ORTHO05D006357 1.4e-09 70.1 171 33.9
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.2e-08 67.0 139 30.9
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 6.0e-08 64.7 80 42.5
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 7.4e-06 57.8 513 22.0


User provided reference genes

Program Settings