Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 6.3e-241 837.0 426 100.0
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 6.2e-188 661.0 438 78.5
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 6.4e-185 651.0 421 77.9
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 1.0e-182 643.7 417 78.9
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 8.7e-182 640.6 417 78.4
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 8.7e-174 614.0 421 75.8
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 8.7e-174 614.0 421 75.8
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 1.5e-173 613.2 420 74.8
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 1.3e-172 610.1 421 74.3
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 8.2e-172 607.4 422 72.3
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 2.4e-171 605.9 421 73.9
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 3.8e-169 598.6 426 72.1
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 2.5e-168 595.9 421 72.4
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 4.2e-168 595.1 421 72.0
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 7.1e-168 594.3 423 70.4
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 7.1e-168 594.3 425 70.8
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 1.2e-167 593.6 421 72.9
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 2.1e-167 592.8 422 73.0
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 2.1e-167 592.8 423 70.0
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 4.6e-167 591.7 416 74.0
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 7.9e-167 590.9 421 71.5
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 7.9e-167 590.9 425 70.6
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 7.9e-167 590.9 421 71.0
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 1.3e-166 590.1 421 71.7
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 3.9e-166 588.6 421 71.0
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 3.9e-166 588.6 427 70.3
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 3.9e-166 588.6 430 69.1
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 5.1e-166 588.2 421 71.7
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 1.9e-165 586.3 427 70.5
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 7.4e-165 584.3 421 69.4
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 9.7e-165 583.9 421 71.0
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 9.7e-165 583.9 430 68.6
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 2.8e-164 582.4 421 70.8
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 2.8e-164 582.4 430 68.6
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 2.8e-164 582.4 430 68.8
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 4.8e-164 581.6 440 67.3
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 6.3e-164 581.3 423 70.2
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 8.2e-164 580.9 425 69.9
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 8.2e-164 580.9 430 67.9
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.1e-163 580.5 427 69.1
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 3.1e-163 578.9 421 71.0
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 3.1e-163 578.9 425 69.6
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 4.1e-163 578.6 421 69.1
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 5.3e-163 578.2 421 69.8
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 5.3e-163 578.2 421 68.9
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 1.2e-162 577.0 421 68.9
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 1.5e-162 576.6 434 68.4
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 3.4e-162 575.5 416 70.2
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.0e-161 573.9 423 68.3
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 1.0e-161 573.9 421 69.8
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 1.3e-161 573.5 432 67.8
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 1.7e-161 573.2 435 67.6
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 1.7e-161 573.2 421 69.1
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 1.7e-161 573.2 421 69.6
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 2.2e-161 572.8 441 67.1
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.9e-161 572.4 441 67.3
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 8.5e-161 570.9 416 70.0
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 1.4e-160 570.1 421 69.1
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 1.4e-160 570.1 416 70.9
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 1.9e-160 569.7 421 68.9
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 1.9e-160 569.7 416 70.0
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.9e-160 569.7 421 67.9
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 2.5e-160 569.3 421 69.1
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 3.2e-160 568.9 416 69.7
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 5.5e-160 568.2 421 68.6
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 1.6e-159 566.6 425 68.5
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 2.1e-159 566.2 421 68.9
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 1.4e-158 563.5 423 68.3
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 1.4e-158 563.5 412 69.7
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 1.8e-158 563.1 412 69.2
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.0e-158 562.4 423 68.1
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 5.7e-157 558.1 412 69.2
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 4.8e-156 555.1 421 68.4
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 8.2e-156 554.3 424 67.7
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 2.4e-155 552.7 432 66.4
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 1.2e-154 550.4 458 63.5
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 1.5e-154 550.1 451 64.3
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 3.4e-154 548.9 513 59.8
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 2.2e-153 546.2 424 66.7
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 2.2e-153 546.2 412 68.2
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.9e-153 545.8 463 62.0
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 6.5e-153 544.7 412 66.5
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 4.2e-152 542.0 468 60.5
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 9.4e-152 540.8 422 66.4
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 2.7e-151 539.3 448 63.2
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 1.1e-149 533.9 425 63.8
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 9.7e-149 530.8 425 63.3
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 3.7e-148 528.9 412 67.7
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 5.3e-147 525.0 421 64.4
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 1.2e-146 523.9 411 65.9
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 2.0e-146 523.1 426 63.4
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 1.0e-145 520.8 412 66.7
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 1.7e-145 520.0 414 65.9
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 4.2e-144 515.4 428 62.9
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.3e-142 509.6 424 63.7
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 2.2e-140 503.1 427 61.8
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 2.6e-138 496.1 437 61.1
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 1.7e-137 493.4 461 56.6
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 5.0e-137 491.9 412 63.1
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.2e-135 487.3 429 60.6
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.6e-135 486.9 423 59.3
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 3.6e-135 485.7 440 59.1
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 1.8e-134 483.4 414 61.1
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 8.2e-132 474.6 450 58.4
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 3.2e-128 462.6 412 58.0
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 6.8e-118 428.3 307 68.7
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 7.5e-117 424.9 307 68.1
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 1.8e-115 420.2 428 53.3
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 5.9e-114 415.2 308 66.9
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 1.3e-113 414.1 311 65.9
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.0e-110 404.4 273 72.2
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 2.4e-107 393.3 346 61.0
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.7e-105 387.1 412 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 3.9e-97 359.4 488 44.5
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 3.6e-95 352.8 438 43.8
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 3.7e-92 342.8 461 43.0
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 7.6e-85 318.5 428 43.2
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.2e-84 317.0 272 61.4
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 1.0e-81 308.1 236 65.3
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 1.5e-80 304.3 315 54.3
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 1.1e-78 298.1 218 65.6
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 2.4e-78 297.0 259 62.5
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 1.7e-73 280.8 481 39.5
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 1.5e-72 277.7 295 52.2
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 6.2e-71 272.3 466 39.5
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 1.8e-70 270.8 302 49.3
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 5.3e-62 242.7 192 61.5
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.1e-55 220.7 186 57.5
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 4.2e-51 206.5 200 56.0
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 1.1e-38 165.2 106 79.2
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 1.5e-37 161.4 105 77.1
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 4.5e-37 159.8 105 73.3
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 2.5e-35 154.1 107 70.1
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 2.5e-35 154.1 102 74.5
Hma1.2p1_0979F.1_g243630 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 4.1e-30 136.7 86 69.8
Hma1.2p1_1179F.1_g264490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 4.1e-30 136.7 86 69.8
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 8.5e-28 129.0 154 51.9
Psat4g095840 Pisum sativum HOM05D003435 ORTHO05D020975 1.6e-26 124.8 129 57.4
Psat5g173160 Pisum sativum HOM05D003435 ORTHO05D020975 1.8e-25 121.3 102 61.8
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 4.4e-24 116.7 102 59.8
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 1.8e-22 111.3 71 80.3
GSVIVG01004639001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.4e-22 110.9 71 81.7
arahy.Tifrunner.gnm1.ann1.B7G4FR Arachis hypogaea HOM05D003435 ORTHO05D004032 4.1e-22 110.2 71 78.9
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 7.0e-22 109.4 71 77.5
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 1.2e-21 108.6 71 78.9
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 1.2e-21 108.6 71 78.9
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 5.0e-20 103.2 71 73.2
Gohir.A11G190351 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.8e-15 87.4 69 65.2


User provided reference genes

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