Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 9.4e-226 786.6 410 100.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 5.0e-150 535.0 413 70.2
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.8e-147 526.6 408 70.3
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 4.5e-135 485.3 412 64.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 5.9e-119 431.8 405 61.7
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 3.2e-117 426.0 443 56.7
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 5.5e-117 425.2 416 58.4
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 3.4e-114 416.0 412 57.8
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 7.0e-112 408.3 419 56.1
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 5.9e-111 405.2 416 58.7
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 3.8e-110 402.5 267 76.8
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.2e-109 399.1 338 63.9
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 5.5e-109 398.7 288 71.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.0e-107 392.9 294 70.4
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 6.8e-107 391.7 291 70.4
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.5e-106 390.6 276 71.7
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 2.0e-106 390.2 267 73.4
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 2.0e-106 390.2 282 72.7
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 3.4e-106 389.4 259 76.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 9.8e-106 387.9 431 53.8
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 3.7e-105 386.0 412 55.3
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.1e-104 384.4 410 56.6
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.4e-104 384.0 382 56.5
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.8e-104 383.6 280 71.1
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 2.4e-104 383.3 379 58.3
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 4.1e-104 382.5 377 59.2
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.1e-104 382.5 388 56.4
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 2.0e-103 380.2 377 57.3
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 7.7e-103 378.3 274 70.8
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.0e-102 375.6 284 69.4
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.0e-102 375.6 262 72.1
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.5e-101 374.0 253 73.9
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 1.5e-101 374.0 410 55.4
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.9e-101 373.6 260 72.7
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.5e-101 373.2 252 73.4
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 4.2e-101 372.5 260 71.9
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 5.5e-101 372.1 400 55.5
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 5.5e-101 372.1 268 70.9
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 7.2e-101 371.7 266 71.8
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 7.2e-101 371.7 266 71.8
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 7.2e-101 371.7 400 55.5
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 9.5e-101 371.3 327 62.1
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 9.5e-101 371.3 294 68.0
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.2e-100 370.9 252 73.4
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-100 370.9 382 54.2
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.2e-100 370.9 416 54.3
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.1e-100 370.2 312 63.1
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 3.6e-100 369.4 267 70.0
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 6.1e-100 368.6 261 71.6
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.0e-99 367.9 415 53.3
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.4e-99 367.5 286 68.2
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.4e-99 367.5 261 71.3
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.8e-99 367.1 275 70.2
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.8e-99 367.1 376 56.1
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.8e-99 365.2 383 53.8
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.8e-99 365.2 264 70.1
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 6.8e-99 365.2 264 70.1
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 6.8e-99 365.2 243 75.3
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 8.9e-99 364.8 243 73.3
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.0e-98 363.6 261 70.1
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.6e-98 363.2 236 76.3
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 2.6e-98 363.2 235 77.0
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 3.4e-98 362.8 248 72.2
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 3.4e-98 362.8 318 61.0
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 4.4e-98 362.5 334 60.5
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 4.4e-98 362.5 334 60.5
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 4.4e-98 362.5 263 70.3
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 4.4e-98 362.5 258 71.7
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.4e-98 362.5 240 74.2
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 4.4e-98 362.5 239 74.1
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 4.4e-98 362.5 258 70.9
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 5.7e-98 362.1 347 57.3
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.7e-98 362.1 240 74.6
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 7.5e-98 361.7 286 66.8
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 7.5e-98 361.7 271 69.7
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 7.5e-98 361.7 268 68.7
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.7e-97 360.5 239 74.1
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 4.9e-97 359.0 234 75.2
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.9e-97 359.0 234 75.2
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.9e-97 359.0 260 69.6
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 6.3e-97 358.6 382 55.5
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-96 357.8 282 66.0
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 1.1e-96 357.8 282 66.0
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.8e-96 357.1 263 67.3
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 2.4e-96 356.7 247 70.4
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.2e-96 356.3 309 63.4
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.1e-96 355.9 234 74.8
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.2e-95 354.4 262 68.7
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 1.2e-95 354.4 247 70.0
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.7e-95 353.2 242 70.2
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 3.5e-95 352.8 226 76.5
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.9e-95 352.1 258 69.8
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.9e-94 349.7 310 61.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 3.9e-94 349.4 378 54.0
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.1e-93 347.8 291 64.6
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.1e-93 347.8 226 76.1
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.8e-91 340.5 255 67.8
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 4.0e-91 339.3 246 69.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 4.0e-91 339.3 254 66.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 4.4e-90 335.9 217 75.1
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 5.8e-90 335.5 280 61.8
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.2e-89 333.6 264 64.0
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.9e-89 333.2 288 60.1
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 3.7e-89 332.8 290 59.0
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.9e-88 330.5 275 61.1
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 3.0e-86 323.2 201 79.6
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.2e-84 317.8 257 63.0
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 3.6e-84 316.2 263 62.4
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.0e-82 310.5 241 68.0
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.4e-81 305.4 265 59.2
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 6.4e-81 305.4 282 59.2
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.4e-80 303.5 285 56.5
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 5.4e-80 302.4 257 58.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 7.8e-79 298.5 178 82.6
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.3e-77 292.0 231 68.0
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.2e-76 291.2 179 80.4
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.7e-76 289.3 228 65.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 6.2e-76 288.9 240 60.4
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 8.1e-76 288.5 241 60.2
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.1e-75 286.6 181 78.5
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.3e-70 271.2 282 55.7
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.3e-70 271.2 213 62.0
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.9e-69 267.3 318 51.3
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 9.6e-69 265.0 201 66.7
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.6e-66 255.4 181 74.6
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.3e-65 254.6 198 69.2
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 7.3e-61 238.8 151 80.1
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.5e-58 231.1 416 41.6
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.9e-57 226.1 164 70.7
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 7.9e-55 218.8 153 69.9
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.0e-51 205.3 226 46.0
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.6e-50 203.8 226 45.6
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 7.6e-50 202.2 392 39.0
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 2.1e-47 194.1 133 75.2
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 4.6e-47 193.0 133 75.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.3e-46 191.4 133 74.4
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.3e-46 191.4 133 74.4
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.8e-46 191.0 133 74.4
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-46 191.0 133 74.4
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 4.3e-45 186.4 380 38.4
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 7.4e-45 185.7 291 43.0
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.1e-40 171.8 255 42.4
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.3e-38 164.1 263 36.5
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-37 161.8 133 64.7
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 3.3e-37 160.2 102 75.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 3.3e-37 160.2 102 75.5
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-37 159.5 133 63.9
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 6.3e-36 156.0 133 63.2
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.2e-36 155.6 147 60.5
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 2.0e-34 151.0 105 77.1
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 2.0e-34 151.0 105 77.1
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 8.4e-33 145.6 105 74.3
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.2e-31 141.7 91 75.8
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.9e-31 139.0 228 44.7
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.9e-30 136.7 294 35.4
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.2e-28 131.0 231 42.4
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.4e-26 123.6 223 39.5
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.8e-25 120.2 133 53.4
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.4e-24 118.2 148 52.7
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 7.9e-23 112.5 81 63.0
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 5.9e-18 96.3 78 65.4
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 2.2e-17 94.4 84 56.0
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.9e-17 94.0 63 66.7
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.1e-16 92.0 212 31.1
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.6e-15 88.2 86 60.5
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 4.7e-15 86.7 52 82.7
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.8e-11 74.7 44 81.8
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 5.0e-09 66.6 68 52.9


User provided reference genes

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