Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.8e-113 412.5 201 100.0
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.5e-99 365.5 189 93.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 3.3e-99 365.2 188 92.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.7e-98 362.8 189 92.1
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.2e-98 362.5 188 92.6
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 6.3e-98 360.9 191 90.6
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.3e-98 360.9 191 90.6
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.3e-98 360.9 191 90.6
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 6.3e-98 360.9 188 92.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 8.2e-98 360.5 188 91.5
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.8e-97 359.4 188 92.0
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.8e-97 359.4 188 91.5
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.8e-97 359.4 191 90.1
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 2.4e-97 359.0 184 94.6
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.4e-97 359.0 188 91.0
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.4e-97 359.0 188 92.0
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 6.9e-97 357.5 188 92.0
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 6.9e-97 357.5 188 90.4
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 6.9e-97 357.5 188 90.4
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 6.9e-97 357.5 188 90.4
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 6.9e-97 357.5 188 90.4
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 9.1e-97 357.1 188 90.4
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 9.1e-97 357.1 191 89.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 9.1e-97 357.1 188 90.4
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.2e-96 356.7 188 91.0
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 91.0
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 89.9
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 89.9
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 2.0e-96 355.9 197 86.3
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.0e-96 355.9 188 89.9
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.6e-96 355.5 188 89.9
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 2.6e-96 355.5 190 88.9
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.6e-96 355.5 188 90.4
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.4e-96 355.1 188 90.4
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.4e-96 355.1 188 91.0
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.4e-96 355.1 188 89.4
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.4e-96 355.1 188 89.4
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 3.4e-96 355.1 188 89.4
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 7.7e-96 354.0 185 91.4
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.3e-95 353.2 188 90.4
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.7e-95 352.8 188 89.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 2.9e-95 352.1 185 90.8
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.8e-95 351.7 188 88.3
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 5.0e-95 351.3 188 88.8
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 5.0e-95 351.3 188 88.3
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 8.5e-95 350.5 188 89.4
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-94 350.1 212 82.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.1e-94 350.1 188 88.8
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.4e-94 349.7 188 88.8
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.9e-94 349.4 188 89.9
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.5e-94 349.0 188 87.2
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.5e-94 349.0 187 88.8
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 3.2e-94 348.6 188 88.3
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.2e-94 348.6 188 88.8
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.2e-94 348.6 188 88.3
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.2e-94 348.6 188 88.3
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.2e-94 348.6 188 88.3
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 4.2e-94 348.2 188 88.8
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 4.2e-94 348.2 188 87.8
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 4.2e-94 348.2 188 88.3
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 5.5e-94 347.8 188 88.3
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 9.4e-94 347.1 185 89.7
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.2e-93 346.7 188 87.8
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.1e-93 345.9 195 86.2
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.1e-93 345.9 185 89.2
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.7e-93 345.5 188 88.3
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.7e-93 345.5 188 88.8
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.7e-93 345.5 188 87.2
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.7e-93 345.5 200 85.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 3.6e-93 345.1 188 87.2
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 3.6e-93 345.1 192 87.5
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.6e-93 345.1 191 86.4
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 6.1e-93 344.4 215 79.5
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.0e-92 343.6 188 87.8
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.0e-92 343.6 188 87.8
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.0e-92 343.6 188 86.7
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.4e-92 343.2 211 82.0
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.4e-92 343.2 188 86.7
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 3.0e-92 342.0 188 87.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 5.1e-92 341.3 188 86.7
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 5.1e-92 341.3 203 81.8
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 6.7e-92 340.9 188 86.7
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 8.8e-92 340.5 188 86.2
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 8.8e-92 340.5 188 86.2
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-91 340.1 188 86.2
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-91 339.7 188 86.2
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.0e-91 339.3 188 85.1
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.3e-91 338.6 188 82.4
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.3e-91 338.6 188 86.7
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 4.4e-91 338.2 199 81.9
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 7.4e-91 337.4 188 85.6
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 9.7e-91 337.0 188 86.2
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.7e-90 336.3 188 85.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.2e-90 335.9 229 75.1
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.6e-88 328.9 188 80.3
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.6e-88 328.9 188 79.3
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.3e-87 326.6 191 77.5
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.9e-87 325.5 188 78.2
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 5.0e-87 324.7 188 77.7
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 7.2e-86 320.9 183 85.2
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 7.2e-86 320.9 183 85.2
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 3.9e-84 315.1 188 75.0
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.9e-84 315.1 192 72.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 2.0e-83 312.8 170 87.1
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 4.4e-83 311.6 170 84.7
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.7e-82 309.7 188 80.3
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.8e-81 306.2 188 72.9
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.4e-81 305.8 169 86.4
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.2e-80 303.5 172 84.3
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 7.7e-80 300.8 160 90.0
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.2e-77 293.5 160 88.1
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 7.5e-75 284.3 163 84.7
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.3e-71 273.5 173 77.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.0e-68 263.8 209 65.1
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.4e-65 253.4 186 65.1
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 4.5e-64 248.4 140 85.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.2e-59 233.8 188 61.2
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.5e-59 231.1 183 59.6
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.3e-55 219.5 149 71.8
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-54 217.2 209 50.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 2.5e-54 216.1 129 82.9
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.3e-52 209.5 109 94.5
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.2e-51 207.2 158 65.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.0e-51 206.5 111 84.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.0e-51 206.5 109 91.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.8e-51 204.9 109 91.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.2e-48 197.2 106 85.8
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 4.6e-48 195.3 111 82.0
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.3e-36 156.4 84 89.3
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.3e-36 156.4 81 92.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.0e-35 153.3 187 49.2
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 5.8e-35 151.8 79 87.3
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 9.9e-35 151.0 79 86.1
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 2.9e-34 149.4 79 86.1
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.1e-32 143.3 80 78.8
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.6e-31 137.9 155 43.9
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 9.5e-30 134.4 71 85.9
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.1e-28 131.0 87 79.3
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.2e-28 128.6 68 85.3
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 3.4e-27 125.9 68 83.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.1e-24 116.7 68 79.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.0e-23 114.4 68 77.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-23 114.4 68 77.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 9.9e-19 97.8 51 86.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.4e-18 94.7 47 89.4
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 4.9e-10 68.9 37 86.5
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 4.9e-10 68.9 37 86.5
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 4.9e-10 68.9 37 86.5
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 4.9e-10 68.9 37 86.5
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 4.9e-10 68.9 37 86.5


User provided reference genes

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