Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.8e-69 265.8 132 100.0
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.7e-56 220.3 132 79.5
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.7e-56 220.3 132 79.5
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 4.3e-55 218.0 123 83.7
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 1.3e-54 216.5 125 81.6
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 1.3e-54 216.5 125 82.4
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 2.1e-54 215.7 130 78.5
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.1e-54 215.7 123 82.9
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.7e-54 214.9 132 79.5
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 6.2e-54 214.2 125 81.6
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 6.2e-54 214.2 125 80.8
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 2.4e-53 212.2 125 79.2
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 5.3e-53 211.1 132 77.3
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 9.0e-53 210.3 125 77.6
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.5e-52 209.5 125 79.2
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.6e-52 208.8 132 75.8
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 2.6e-52 208.8 136 75.7
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.5e-52 208.0 123 80.5
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 7.6e-52 207.2 133 75.9
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 9.9e-52 206.8 125 78.4
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 9.9e-52 206.8 125 77.6
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 9.9e-52 206.8 125 75.2
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 2.9e-51 205.3 123 74.8
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 2.9e-51 205.3 125 76.8
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 6.4e-51 204.1 123 77.2
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 8.4e-51 203.8 125 76.0
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 8.4e-51 203.8 125 76.8
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 8.4e-51 203.8 125 75.2
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 1.1e-50 203.4 120 80.0
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.1e-50 203.4 125 75.2
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.9e-50 202.6 125 76.8
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.4e-50 202.2 125 75.2
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 2.4e-50 202.2 125 75.2
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 5.5e-50 201.1 125 74.4
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 9.3e-50 200.3 125 76.8
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.6e-49 199.5 125 74.4
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.6e-49 199.5 123 74.0
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 1.6e-49 199.5 123 72.4
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 2.1e-49 199.1 125 76.0
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.7e-49 198.7 125 75.2
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.7e-49 198.7 135 71.1
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 3.5e-49 198.4 125 74.4
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 6.0e-49 197.6 123 74.0
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 6.0e-49 197.6 123 74.0
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 6.0e-49 197.6 126 75.4
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 6.0e-49 197.6 125 74.4
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 6.0e-49 197.6 125 75.2
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 7.9e-49 197.2 125 73.6
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 7.9e-49 197.2 134 67.9
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 7.9e-49 197.2 125 72.8
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.3e-48 196.4 125 72.0
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 1.8e-48 196.1 125 73.6
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 1.8e-48 196.1 125 74.4
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 2.3e-48 195.7 125 76.0
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 2.3e-48 195.7 125 72.8
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 5.1e-48 194.5 125 72.8
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 5.1e-48 194.5 125 72.8
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.1e-47 193.4 124 74.2
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.1e-47 193.4 125 72.8
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.1e-47 193.4 125 74.4
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.5e-47 193.0 124 72.6
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.9e-47 192.6 125 72.0
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.9e-47 192.6 125 72.0
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 1.9e-47 192.6 124 72.6
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 2.5e-47 192.2 124 71.8
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 3.3e-47 191.8 123 75.6
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 3.3e-47 191.8 125 72.8
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 4.3e-47 191.4 126 73.0
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 7.4e-47 190.7 125 73.6
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 7.4e-47 190.7 125 70.4
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 9.6e-47 190.3 123 73.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.3e-46 189.9 125 71.2
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.3e-46 189.9 125 73.6
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.3e-46 189.9 135 70.4
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.6e-46 189.5 123 72.4
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 1.6e-46 189.5 123 72.4
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 2.1e-46 189.1 125 69.6
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.8e-46 188.7 123 70.7
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 3.7e-46 188.3 125 72.0
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 6.2e-46 187.6 124 70.2
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 6.2e-46 187.6 125 72.8
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.8e-45 186.0 123 72.4
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 4.0e-45 184.9 136 68.4
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 1.2e-44 183.3 136 67.6
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.5e-44 183.0 136 67.6
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.5e-44 183.0 136 67.6
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.5e-44 183.0 136 67.6
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 3.4e-44 181.8 136 66.9
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 3.4e-44 181.8 136 66.9
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 3.4e-44 181.8 136 66.9
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 3.4e-44 181.8 136 66.2
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 3.4e-44 181.8 136 67.6
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.5e-44 181.4 135 65.9
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 4.5e-44 181.4 125 69.6
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 5.8e-44 181.0 136 66.2
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 5.8e-44 181.0 129 68.2
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 5.8e-44 181.0 125 68.8
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 7.6e-44 180.6 125 68.0
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.0e-43 180.3 117 73.5
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 1.4e-42 176.4 145 64.8
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 2.5e-42 175.6 145 63.4
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 4.2e-42 174.9 145 64.1
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 4.2e-42 174.9 146 63.0
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 7.1e-42 174.1 143 64.3
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 7.1e-42 174.1 143 64.3
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 9.3e-42 173.7 149 61.7
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.6e-41 172.9 150 57.3
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 2.3e-40 169.1 164 53.0
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 3.0e-40 168.7 125 64.0
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 8.7e-40 167.2 123 67.5
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 9.7e-39 163.7 125 64.0
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 3.4e-36 155.2 96 74.0
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.5e-34 149.1 127 57.5
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 5.5e-34 147.9 123 58.5
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 9.3e-34 147.1 127 57.5
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 2.7e-33 145.6 95 72.6
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 3.0e-32 142.1 123 60.2
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 6.7e-32 141.0 123 55.3
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 2.5e-31 139.0 137 51.1
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.5e-31 139.0 93 71.0
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.1e-23 113.6 68 80.9
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 4.4e-23 111.7 62 80.6
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 4.4e-23 111.7 62 80.6
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 2.2e-22 109.4 64 81.2
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 4.8e-22 108.2 62 77.4
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 8.2e-22 107.5 63 81.0
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 5.3e-21 104.8 67 73.1
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.2e-20 103.6 62 74.2
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.5e-20 101.7 67 71.6
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 7.7e-20 100.9 64 75.0
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.0e-19 100.5 64 71.9
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.7e-19 99.8 62 71.0
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 3.8e-19 98.6 63 68.3
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 5.0e-19 98.2 118 39.8
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 1.1e-18 97.1 75 66.7
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 1.1e-18 97.1 69 62.3
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.1e-18 97.1 63 73.0
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 4.2e-18 95.1 69 65.2
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 2.7e-17 92.4 66 69.7
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.3e-15 85.5 53 77.4
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 3.7e-14 82.0 56 67.9
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.1e-13 80.5 69 58.0
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 9.1e-13 77.4 116 34.5
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.7e-11 73.2 62 50.0
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 1.5e-10 70.1 50 68.0
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 2.5e-10 69.3 108 32.4
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 1.0e-08 63.9 105 34.3
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.6e-07 59.3 58 39.7
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.8e-06 55.1 45 53.3


User provided reference genes

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