Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 3.2e-209 731.5 366 100.0
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 4.9e-173 611.3 368 81.2
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.9e-171 604.4 336 86.6
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.5e-169 599.0 368 81.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 5.4e-164 581.3 327 84.4
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 7.8e-163 577.4 317 86.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 6.6e-162 574.3 315 87.0
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.5e-161 573.2 327 83.8
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 7.3e-161 570.9 304 87.5
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 8.0e-160 567.4 314 84.7
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.3e-159 565.8 315 84.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.1e-159 565.5 317 84.5
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.1e-159 565.5 311 85.5
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.2e-159 564.7 314 84.7
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 8.9e-159 563.9 365 74.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.6e-158 562.4 304 87.2
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 5.8e-158 561.2 314 83.1
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.7e-157 559.7 325 82.5
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.9e-157 558.9 368 73.9
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 3.7e-157 558.5 319 82.1
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.7e-157 558.5 316 82.0
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.1e-156 557.0 313 83.1
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.4e-156 556.6 308 84.7
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 3.2e-156 555.4 316 81.6
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 9.2e-156 553.9 336 80.1
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.6e-155 553.1 316 82.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.0e-155 552.7 315 83.8
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.0e-155 552.7 304 83.9
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 6.0e-155 551.2 364 74.2
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 6.0e-155 551.2 314 83.4
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 6.0e-155 551.2 324 80.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 6.0e-155 551.2 314 82.5
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 7.8e-155 550.8 322 80.7
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 7.8e-155 550.8 301 85.4
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.0e-154 550.4 332 78.6
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.7e-154 549.7 327 80.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.7e-154 549.7 370 74.1
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.7e-154 549.7 314 83.1
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.9e-154 548.5 304 83.2
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 5.0e-154 548.1 336 79.2
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 5.0e-154 548.1 315 82.9
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.1e-153 547.0 316 81.6
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.5e-153 545.8 366 72.4
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 4.3e-153 545.0 367 71.9
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 4.3e-153 545.0 345 75.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 5.6e-153 544.7 317 80.4
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 5.6e-153 544.7 325 78.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.6e-153 544.7 303 83.5
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 7.3e-153 544.3 304 83.9
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 7.3e-153 544.3 317 80.4
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 9.5e-153 543.9 307 82.7
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 9.5e-153 543.9 306 82.4
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 9.5e-153 543.9 320 80.3
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 2.1e-152 542.7 325 78.2
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.1e-152 542.7 320 80.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.1e-152 542.7 304 83.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.6e-152 542.0 324 79.0
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 8.1e-152 540.8 316 79.4
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.4e-151 540.0 308 84.7
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.8e-151 539.7 314 78.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.8e-151 539.7 304 82.9
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.1e-151 538.9 302 82.8
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 4.0e-151 538.5 388 70.1
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 6.8e-151 537.7 339 76.1
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 6.8e-151 537.7 319 77.1
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 8.9e-151 537.3 331 77.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 8.9e-151 537.3 331 77.9
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 8.9e-151 537.3 366 71.9
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 8.9e-151 537.3 315 80.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-150 537.0 331 77.9
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-150 536.6 332 77.7
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.5e-150 536.6 296 82.8
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 2.6e-150 535.8 327 77.1
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.4e-150 535.4 308 83.8
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 7.5e-150 534.3 319 79.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.5e-150 534.3 319 79.6
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 7.5e-150 534.3 301 80.7
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 9.8e-150 533.9 306 81.7
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-149 533.1 325 78.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 2.2e-149 532.7 304 80.6
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.9e-149 532.3 304 79.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.7e-149 531.9 325 75.7
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 8.3e-149 530.8 333 77.2
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-148 529.6 369 70.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 4.1e-148 528.5 314 77.7
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 5.4e-148 528.1 317 79.2
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 5.4e-148 528.1 341 73.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.6e-147 525.0 306 80.1
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 6.0e-147 524.6 308 79.2
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.0e-146 523.9 315 79.4
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.3e-146 523.5 372 67.5
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.0e-146 522.3 332 79.8
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 3.0e-146 522.3 316 76.6
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.5e-145 519.2 297 79.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 5.6e-145 518.1 321 77.9
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.3e-145 517.7 320 75.0
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.5e-145 517.3 303 79.9
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 2.8e-144 515.8 315 74.9
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.4e-143 513.5 313 79.9
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.8e-143 513.1 328 74.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 5.8e-142 508.1 295 79.3
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.3e-141 506.9 363 66.1
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.7e-141 506.5 295 79.0
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 9.2e-140 500.7 291 78.0
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.7e-138 496.5 428 59.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 6.6e-138 494.6 335 73.7
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 8.6e-138 494.2 311 77.2
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.9e-137 493.0 332 72.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 2.1e-131 473.0 344 68.3
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 3.6e-128 462.2 277 80.1
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 3.1e-127 459.1 340 68.5
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.7e-123 446.0 260 78.8
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.0e-122 444.1 286 71.7
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.5e-121 439.5 285 72.3
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.9e-119 431.4 244 83.6
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 5.5e-116 421.8 302 71.5
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.7e-115 419.5 286 69.9
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 4.8e-112 408.7 274 75.5
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 5.3e-111 405.2 285 67.7
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.6e-107 392.1 232 76.7
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 6.7e-106 388.3 287 64.5
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 3.4e-102 375.9 290 61.7
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.8e-98 363.6 220 78.6
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 8.7e-98 361.3 251 66.9
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.8e-95 353.6 294 58.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.1e-91 340.1 254 65.4
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.8e-90 337.0 264 67.8
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.8e-85 319.3 288 55.9
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.3e-81 306.2 168 85.7
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.2e-77 293.5 155 85.2
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.1e-67 260.4 332 50.0
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.8e-66 257.3 230 57.8
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 3.8e-61 239.6 127 86.6
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.7e-59 232.6 129 79.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-53 213.4 146 71.2
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 7.0e-47 192.2 146 65.8
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.5e-44 183.7 146 64.4
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.3e-44 183.0 100 80.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.3e-40 168.7 95 76.8
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 7.0e-39 165.6 146 58.2
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.6e-36 156.0 108 64.8
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.2e-30 138.3 72 91.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.7e-22 110.5 91 60.4
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.6e-21 105.5 64 79.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-20 104.4 57 80.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 8.1e-19 99.0 67 67.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 8.1e-19 99.0 67 67.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.1e-15 88.6 44 88.6
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-15 87.4 44 88.6
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 4.2e-15 86.7 43 90.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 6.6e-13 79.3 41 80.5
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 2.1e-11 74.3 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 9.0e-10 68.9 40 85.0
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.6e-06 58.2 55 52.7
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 3.5e-06 57.0 31 80.6


User provided reference genes

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