Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 9.1e-226 786.6 395 100.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.4e-77 294.3 330 50.9
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.5e-71 274.2 333 46.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 7.8e-68 261.9 282 51.4
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.1e-66 258.1 331 46.5
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.6e-65 253.1 282 50.7
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.1e-64 250.0 335 41.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.4e-63 246.1 330 45.2
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 5.8e-63 245.7 337 42.1
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 7.5e-63 245.4 334 41.9
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.4e-62 242.3 338 43.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.4e-61 240.4 335 40.9
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.2e-60 238.0 333 42.3
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.1e-60 237.3 334 40.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.1e-60 237.3 334 40.7
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 6.0e-60 235.7 335 42.1
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-59 234.6 334 40.1
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.9e-58 230.7 337 40.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.9e-58 230.7 335 40.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.5e-58 230.3 316 41.8
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.5e-58 230.3 334 41.3
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 7.3e-58 228.8 336 38.4
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.8e-57 226.9 334 41.9
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.8e-57 226.9 272 45.2
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.8e-57 226.9 336 38.7
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 8.1e-57 225.3 335 39.1
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-56 224.9 329 40.7
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.1e-56 223.4 340 38.8
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.0e-56 223.0 337 40.1
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.9e-56 221.9 316 40.8
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.5e-55 221.1 279 42.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.5e-55 221.1 334 37.4
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.5e-55 221.1 337 39.8
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.6e-55 220.3 291 42.6
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.6e-55 220.3 336 39.9
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 4.4e-55 219.5 315 40.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.9e-55 218.4 328 41.8
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 9.9e-55 218.4 270 44.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.7e-54 217.6 308 40.6
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.7e-54 217.6 328 39.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.7e-54 217.6 328 39.3
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-54 217.6 336 39.3
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.9e-54 216.9 335 39.1
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 2.9e-54 216.9 284 42.3
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.4e-54 215.7 322 41.3
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 8.4e-54 215.3 331 40.5
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-53 214.9 286 43.7
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.1e-53 214.9 286 44.1
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 5.4e-53 212.6 335 39.7
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.4e-53 212.6 331 38.4
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.2e-52 211.5 333 39.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.2e-52 211.5 348 37.9
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.6e-52 211.1 285 43.5
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.1e-52 210.7 302 40.4
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.7e-52 210.3 302 40.4
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.5e-52 209.9 338 40.2
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 6.0e-52 209.1 347 37.8
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.8e-52 208.8 334 37.7
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.0e-51 208.4 334 37.4
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.0e-51 208.4 291 43.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.7e-51 207.6 275 42.2
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.9e-51 206.5 328 37.5
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 5.1e-51 206.1 336 39.6
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 8.7e-51 205.3 342 39.5
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.1e-50 204.9 331 37.8
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 3.3e-50 203.4 270 40.0
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 3.3e-50 203.4 273 39.9
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 4.3e-50 203.0 286 42.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 7.3e-50 202.2 323 36.8
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 9.6e-50 201.8 334 37.4
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-49 201.4 328 37.2
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.6e-49 201.1 270 40.7
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.6e-49 201.1 329 37.1
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.6e-49 201.1 336 38.7
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.8e-49 200.3 273 39.2
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.2e-49 199.1 280 38.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 8.1e-49 198.7 270 41.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.1e-48 198.4 272 41.5
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.1e-48 198.4 333 35.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-48 198.4 329 37.7
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.1e-48 196.8 270 45.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.0e-48 196.4 319 39.5
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.0e-48 196.4 270 40.0
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 4.0e-48 196.4 273 38.8
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 6.9e-48 195.7 270 38.5
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 6.9e-48 195.7 277 40.8
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.6e-47 193.7 274 40.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.4e-47 193.4 270 39.6
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 7.6e-47 192.2 271 40.2
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 7.6e-47 192.2 334 35.6
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 9.9e-47 191.8 330 37.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 9.9e-47 191.8 333 36.3
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.7e-46 191.0 270 39.3
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.2e-46 190.7 273 40.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 4.9e-46 189.5 265 41.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.4e-46 189.1 335 36.4
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 6.4e-46 189.1 274 41.2
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 8.4e-46 188.7 333 34.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.1e-45 188.3 307 37.5
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.4e-45 187.2 276 39.1
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.4e-45 186.0 304 37.5
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 7.1e-45 185.7 317 36.9
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 9.3e-45 185.3 313 37.4
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.2e-44 184.9 274 39.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.6e-44 184.5 336 33.3
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.1e-44 184.1 337 34.1
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.5e-44 183.3 308 36.7
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.5e-44 183.3 327 37.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 4.6e-44 183.0 275 41.1
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.0e-43 181.8 276 39.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.3e-43 181.4 294 36.4
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.3e-43 181.4 305 37.4
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.3e-43 180.6 317 36.3
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 5.1e-43 179.5 313 36.7
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.5e-42 177.9 269 41.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.5e-42 177.9 312 37.8
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.3e-41 174.9 304 37.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.6e-41 173.3 340 35.9
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 6.2e-41 172.6 278 38.8
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 8.1e-41 172.2 282 35.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-40 171.8 271 38.4
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.4e-40 171.4 321 34.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.4e-40 170.6 272 36.0
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 9.0e-40 168.7 329 35.3
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.5e-39 167.9 275 33.8
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-39 167.5 304 36.2
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.4e-38 162.5 277 37.2
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.4e-37 160.6 331 34.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 5.4e-37 159.5 275 36.0
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.3e-35 154.8 329 33.1
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 7.4e-34 149.1 254 36.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.4e-34 149.1 278 32.0
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-33 146.7 123 54.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.2e-33 146.0 287 33.1
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.3e-32 142.9 123 53.7
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 5.3e-32 142.9 147 51.7
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.8e-31 139.4 271 33.9
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.2e-29 133.7 123 50.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.2e-28 131.7 256 34.4
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.6e-28 131.3 229 34.1
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.7e-28 130.6 201 34.3
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.5e-28 130.2 229 34.1
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 4.5e-23 113.2 135 40.7
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.5e-15 88.2 325 26.8
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 3.8e-14 83.6 166 33.7
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.7e-12 77.4 89 40.4
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 3.4e-07 60.5 165 29.1
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.0e-06 58.9 39 69.2


User provided reference genes

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