Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.2e-222 775.4 419 100.0
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.2e-153 546.2 413 74.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.3e-142 509.6 415 71.8
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 5.2e-139 498.4 420 71.9
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.8e-131 473.4 355 73.8
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 4.5e-130 468.8 418 65.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 4.5e-130 468.8 415 67.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 8.4e-129 464.5 418 64.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.9e-128 463.4 414 66.2
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.2e-128 462.6 408 65.7
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 5.4e-128 461.8 418 64.6
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.6e-127 458.8 425 65.4
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.8e-126 456.8 431 63.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.1e-126 455.3 418 64.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.9e-125 453.4 420 63.1
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 3.3e-125 452.6 418 64.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.3e-125 452.6 409 65.3
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.3e-124 450.7 413 66.1
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.1e-124 449.9 408 64.0
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.7e-124 449.1 418 63.2
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.7e-124 449.1 426 63.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 8.1e-124 448.0 417 64.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.1e-123 447.6 424 62.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.4e-123 447.2 409 65.0
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.1e-123 446.0 413 64.6
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.2e-122 444.1 414 64.0
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.5e-122 443.7 427 62.5
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.0e-122 443.4 412 64.3
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 2.6e-122 443.0 412 64.6
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.6e-122 443.0 416 63.2
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.9e-122 441.0 412 64.3
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 1.3e-121 440.7 427 61.4
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.2e-120 436.0 409 64.3
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 2.7e-119 433.0 413 63.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.0e-119 431.8 422 60.9
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.9e-118 429.1 420 60.7
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 5.1e-118 428.7 420 61.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 8.7e-118 427.9 433 61.0
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.5e-117 427.2 424 62.0
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 7.4e-117 424.9 418 62.2
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.8e-116 422.9 366 66.4
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.8e-116 422.2 412 61.4
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 8.2e-116 421.4 411 60.6
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 3.1e-115 419.5 411 60.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 4.0e-115 419.1 418 60.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 4.0e-115 419.1 412 62.1
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 5.3e-115 418.7 424 58.7
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 6.9e-115 418.3 445 58.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 9.0e-115 417.9 410 62.2
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.5e-114 417.2 418 60.5
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.8e-114 415.2 417 61.4
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.0e-113 414.5 438 59.1
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.7e-113 413.7 442 57.7
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.8e-113 412.5 413 59.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.1e-112 411.0 410 62.0
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.4e-112 410.6 413 62.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.2e-111 407.5 436 57.3
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.2e-111 407.5 409 60.1
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.3e-110 404.1 467 55.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.8e-110 403.7 420 59.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.8e-110 403.7 365 65.2
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.8e-110 403.7 415 60.5
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-110 403.3 405 60.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.1e-109 401.0 416 59.1
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.5e-109 399.8 413 59.8
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.3e-108 397.5 407 60.0
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 2.8e-108 396.4 412 60.0
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-107 394.4 412 60.0
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.4e-107 394.0 404 60.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.8e-107 393.7 422 58.1
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.3e-107 392.1 405 61.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.6e-106 389.8 365 63.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.6e-106 389.8 404 60.6
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.6e-106 388.3 409 58.9
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.7e-105 387.1 423 59.3
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.7e-105 387.1 417 57.8
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 5.0e-105 385.6 425 56.7
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.2e-104 382.9 489 52.1
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.2e-104 382.5 418 59.1
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.7e-103 379.8 416 58.9
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 7.9e-103 378.3 407 57.0
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.3e-101 372.5 411 56.7
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 9.7e-101 371.3 415 56.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.7e-100 370.5 449 53.9
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.7e-100 370.5 407 57.7
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 8.2e-100 368.2 425 56.0
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.8e-99 367.1 387 57.9
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 3.1e-99 366.3 419 54.7
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 9.1e-99 364.8 368 60.1
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 9.1e-99 364.8 425 54.8
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.0e-98 363.6 426 55.2
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.0e-98 363.6 425 54.6
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.3e-97 360.9 270 72.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.7e-97 360.5 416 55.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.4e-96 357.5 414 54.3
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.6e-95 354.0 415 54.9
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.1e-95 353.6 380 57.1
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.1e-95 353.6 380 57.1
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.1e-95 352.1 399 54.9
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.9e-95 351.7 421 55.3
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.7e-92 344.0 316 64.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.2e-90 337.8 409 52.3
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.1e-88 331.3 417 53.5
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 9.4e-88 328.2 415 53.0
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 3.9e-86 322.8 291 66.0
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.5e-85 320.9 440 49.1
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 4.4e-85 319.3 303 63.0
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 4.8e-84 315.8 370 53.2
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.3e-83 312.4 334 61.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 5.3e-83 312.4 414 51.7
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.6e-82 310.1 392 54.1
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 5.9e-82 308.9 390 52.8
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 4.7e-79 299.3 265 66.8
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.3e-77 293.1 299 60.5
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.4e-67 261.2 332 50.3
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.8e-67 260.8 262 60.7
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 4.5e-66 256.1 306 53.9
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.1e-63 245.7 257 59.9
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.1e-63 245.7 270 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.4e-62 244.6 413 43.1
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 4.9e-60 236.1 268 56.7
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.4e-59 232.6 267 56.2
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.0e-58 230.7 262 55.3
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.7e-58 230.3 261 55.9
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 2.3e-57 227.3 432 39.4
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 3.8e-57 226.5 260 58.1
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.5e-56 224.6 189 65.1
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 8.9e-54 215.3 263 52.1
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 4.4e-53 213.0 268 55.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 5.8e-53 212.6 267 53.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 5.6e-48 196.1 382 40.8
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.5e-45 188.0 135 69.6
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.4e-45 186.8 449 38.1
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.2e-44 184.1 397 40.3
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 3.2e-43 180.3 134 68.7
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-41 174.5 182 59.9
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.6e-34 151.4 471 32.9
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 3.9e-33 146.7 176 54.5
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 4.3e-32 143.3 137 62.8
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 5.6e-32 142.9 147 57.8
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 6.2e-31 139.4 194 49.0
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.4e-30 138.3 157 55.4
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 4.2e-27 126.7 141 51.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-21 108.2 135 52.6
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 2.9e-12 77.4 230 35.7
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.2e-10 72.0 146 39.0
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.3e-07 62.0 38 73.7
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.4e-06 58.5 138 34.8
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.4e-06 58.5 81 40.7
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 5.3e-06 56.6 36 72.2


User provided reference genes

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