Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 0.0e+00 3494.1 1787 100.0
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 1593.9 1776 53.5
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 0.0e+00 1573.9 1777 52.9
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 0.0e+00 1526.1 1728 53.1
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 0.0e+00 1177.9 789 81.5
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1109.4 1804 42.2
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1084.7 1828 39.6
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1084.7 1264 50.8
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1083.2 1695 41.3
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.8e-310 1070.1 1801 40.7
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 4.6e-309 1065.4 1833 40.6
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 5.6e-307 1058.5 1802 39.7
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 5.4e-302 1042.0 1782 40.5
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.1e-297 1027.7 1838 39.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 1.8e-297 1026.9 1813 39.5
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.8e-295 1019.2 1795 38.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 4.3e-291 1005.7 1862 37.7
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 7.4e-291 1005.0 1779 39.0
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 9.6e-291 1004.6 1810 39.0
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 9.9e-288 994.6 1808 39.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 3.8e-287 992.6 1822 38.4
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 1.5e-283 980.7 1796 38.4
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 3.3e-283 979.5 1789 39.6
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.0e-279 968.0 1795 38.2
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 9.3e-278 961.4 1783 38.7
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 3.5e-277 959.5 1611 40.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.0e-276 958.0 1804 37.6
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.0e-276 958.0 1802 38.0
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 3.9e-276 956.1 1815 37.7
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.1e-276 955.7 1812 37.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.2e-274 948.3 1804 37.6
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.1e-273 948.0 1796 37.6
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.1e-273 948.0 1813 37.5
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 9.0e-273 944.9 1808 37.6
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 7.9e-269 931.8 1702 38.8
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 3.7e-266 922.9 1814 38.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 1.4e-265 921.0 1412 41.6
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 3.1e-257 893.3 1800 37.7
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 9.4e-254 881.7 2111 32.7
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 5.7e-251 872.5 1802 36.0
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.7e-247 860.9 1907 34.7
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 4.0e-244 849.7 1775 35.3
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 5.2e-244 849.4 1774 36.7
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.5e-243 847.8 1797 35.8
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 7.5e-243 845.5 1729 37.2
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 7.5e-243 845.5 1729 37.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.6e-240 837.8 1754 36.1
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.3e-239 834.7 1763 34.9
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 1.7e-239 834.3 1781 36.5
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.2e-235 821.6 1380 39.3
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 1.3e-234 818.1 1813 34.6
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 8.3e-234 815.5 1774 35.8
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.7e-232 808.9 1868 34.9
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.7e-231 807.7 1267 40.9
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 6.6e-231 805.8 1674 35.8
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 7.2e-230 802.4 1808 34.2
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 4.4e-227 793.1 1833 33.9
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 2.2e-226 790.8 1682 35.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 3.7e-226 790.0 1763 35.2
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 9.2e-225 785.4 1795 34.8
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 7.8e-224 782.3 1847 34.8
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.5e-222 777.3 1774 35.5
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 5.8e-219 766.1 1277 40.1
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 2.2e-218 764.2 1724 34.6
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 3.2e-217 760.4 1864 32.9
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 3.0e-215 753.8 1882 32.7
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 2.5e-214 750.7 1295 38.7
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 4.0e-212 743.4 1847 33.2
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.3e-207 728.4 1844 32.9
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.3e-202 711.8 1294 37.2
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 5.4e-201 706.4 1768 32.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 3.5e-200 703.7 1766 34.1
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.3e-199 701.0 1750 33.5
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 3.6e-197 693.7 1805 31.4
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 5.8e-195 686.4 1762 33.5
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 6.4e-194 682.9 1771 33.7
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.4e-193 681.8 1774 33.7
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 4.2e-193 680.2 1753 32.6
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.6e-192 676.8 1526 35.4
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.6e-189 667.2 1784 32.8
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 4.0e-188 663.7 861 43.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 6.9e-188 662.9 1771 33.3
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.2e-184 652.1 1773 31.2
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.6e-184 651.7 1773 32.3
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 3.9e-183 647.1 820 45.4
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 7.3e-182 642.9 1761 32.0
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 4.6e-168 597.0 1869 29.7
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 1.3e-167 595.5 683 46.7
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 3.1e-164 584.3 646 48.6
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.9e-161 575.1 680 47.9
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-160 572.4 758 43.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 3.9e-159 567.4 1820 30.2
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.1e-156 557.8 1276 33.2
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.4e-153 548.9 1835 29.3
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 2.7e-136 491.5 1768 29.0
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 6.7e-135 486.9 1390 32.9
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 3.5e-115 421.4 911 32.1
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-105 389.0 410 48.5
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 8.9e-103 380.2 1126 32.4
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 5.2e-87 327.8 642 35.7
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.1e-84 318.2 835 33.1
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 2.7e-83 315.5 923 28.9
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.0e-82 313.5 1253 30.8
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 2.4e-79 302.4 450 40.9
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.3e-74 286.6 456 34.9
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 4.4e-70 271.6 535 31.2
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.0e-66 260.4 872 28.4
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 7.4e-65 254.2 603 36.3
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.4e-63 249.2 864 26.5
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.9e-53 215.7 501 36.7
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.7e-48 198.7 1213 24.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 4.8e-48 198.4 666 26.3
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.4e-38 165.6 711 31.2
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.1e-27 129.8 128 46.9
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 3.7e-24 119.0 136 45.6
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 1.7e-16 93.6 326 32.5
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 2.0e-14 86.7 413 26.4
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 7.7e-14 84.7 296 34.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 6.5e-13 81.6 77 55.8
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.2e-12 79.3 736 22.1
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 5.5e-12 78.6 324 27.8
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 4.7e-11 75.5 200 35.0
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.6e-09 69.7 95 41.1
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 3.7e-08 65.9 52 53.8
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 3.1e-07 62.8 235 29.8
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 9.1e-07 61.2 333 27.9


User provided reference genes

Program Settings