Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.5e-167 592.8 300 100.0
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.2e-130 468.4 298 80.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 2.4e-125 452.6 300 81.3
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.1e-122 443.7 301 78.4
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.4e-122 442.6 304 76.0
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.7e-121 439.1 301 78.4
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 6.0e-121 438.0 302 75.8
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 7.9e-121 437.6 304 76.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.0e-120 437.2 304 75.0
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.0e-120 437.2 304 76.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.0e-120 435.6 305 76.1
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.1e-120 434.9 303 77.6
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.7e-120 434.5 294 75.9
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 8.7e-120 434.1 303 76.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.5e-119 433.3 296 76.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.3e-119 432.2 303 75.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 5.6e-119 431.4 304 75.7
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 7.4e-119 431.0 299 76.6
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.4e-119 431.0 299 76.6
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.3e-118 430.3 304 75.7
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.3e-118 430.3 303 75.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.6e-118 429.9 301 75.4
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.6e-118 429.9 303 75.2
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.1e-118 429.5 296 76.0
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.8e-118 428.3 277 79.4
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 8.1e-118 427.6 277 79.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 8.1e-118 427.6 303 74.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-117 427.2 302 75.5
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-117 426.8 304 73.7
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-117 426.8 299 75.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.8e-117 426.4 297 75.1
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.8e-117 426.4 296 76.0
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.0e-117 425.2 305 75.1
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.3e-117 424.9 313 73.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.3e-117 424.9 304 73.4
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 6.9e-117 424.5 302 74.5
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 9.0e-117 424.1 302 74.8
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 9.0e-117 424.1 296 75.7
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.5e-116 423.3 305 74.8
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.5e-116 423.3 295 76.6
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.4e-116 422.2 318 73.3
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.5e-116 421.8 305 74.4
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 7.6e-116 421.0 308 75.6
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.5e-115 417.9 303 73.9
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.4e-114 416.8 304 74.0
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.1e-113 412.9 296 73.6
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.9e-112 408.7 296 72.0
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 6.7e-112 407.9 302 73.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 6.7e-112 407.9 303 73.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-111 407.1 303 72.9
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.5e-111 406.8 261 79.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.5e-111 406.8 296 72.3
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.9e-111 406.4 297 71.4
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 2.5e-111 406.0 304 73.7
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.5e-111 406.0 305 69.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 3.3e-111 405.6 303 72.9
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.7e-111 404.8 303 72.6
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.6e-110 403.3 297 71.0
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.6e-110 403.3 304 72.7
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 2.1e-110 402.9 300 71.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 4.8e-110 401.7 294 73.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 4.8e-110 401.7 261 78.5
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 6.3e-110 401.4 301 70.1
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 8.2e-110 401.0 304 71.4
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.1e-109 400.6 261 78.9
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.1e-109 399.1 264 79.9
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.6e-108 396.0 322 68.3
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.6e-108 396.0 301 69.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 2.6e-108 396.0 304 69.7
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 3.4e-108 395.6 314 69.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.4e-108 395.6 299 71.6
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 3.4e-108 395.6 295 72.5
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 4.5e-108 395.2 295 72.5
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.7e-107 393.3 303 70.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.8e-107 392.1 261 77.4
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 3.8e-107 392.1 350 63.4
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.0e-107 391.7 297 70.0
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.5e-106 389.4 293 72.0
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 5.5e-106 388.3 295 71.5
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 9.3e-106 387.5 295 71.5
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.6e-105 386.7 297 71.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.1e-105 386.3 296 70.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.1e-105 386.3 259 79.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 3.5e-105 385.6 301 70.1
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 7.9e-105 384.4 304 68.4
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.3e-104 383.6 295 70.5
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.0e-104 382.5 299 68.9
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.9e-104 382.1 298 69.5
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.5e-103 379.4 259 76.4
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 3.3e-103 379.0 304 68.1
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 9.7e-103 377.5 302 68.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-102 377.1 302 67.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.3e-102 377.1 295 69.5
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.6e-102 376.7 255 79.2
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-102 376.7 245 80.0
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-102 376.3 295 68.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.8e-102 375.9 245 80.0
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 4.8e-102 375.2 247 80.2
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 8.2e-102 374.4 261 75.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-101 374.0 295 67.8
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.4e-101 372.9 294 68.7
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 6.9e-101 371.3 296 69.6
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 9.0e-101 370.9 259 75.3
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.4e-100 369.0 277 71.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.2e-99 366.3 247 79.4
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 6.5e-99 364.8 243 77.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.9e-98 363.2 298 67.1
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 5.5e-98 361.7 256 73.4
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.6e-97 360.1 295 67.5
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.9e-96 355.5 248 74.6
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-95 354.0 295 64.7
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.5e-95 353.6 299 65.2
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.3e-94 350.5 217 84.8
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.7e-94 349.0 314 63.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 6.9e-93 344.7 240 75.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-88 330.9 295 63.7
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.1e-88 328.6 285 62.8
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 3.3e-87 325.9 278 63.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.3e-86 323.9 279 64.5
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.7e-86 322.4 224 75.9
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.5e-84 315.5 295 62.0
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.5e-83 311.2 218 75.7
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 7.2e-82 308.1 294 60.9
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.0e-80 304.3 242 67.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-78 296.6 237 69.2
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 9.1e-77 291.2 255 63.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-75 287.7 180 83.9
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.3e-75 287.3 215 74.0
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.2e-75 286.6 324 49.4
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 6.5e-75 285.0 298 54.0
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.2e-74 282.3 179 79.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 9.4e-74 281.2 256 61.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 8.8e-72 274.6 306 50.3
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.5e-71 273.9 267 57.7
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 7.5e-71 271.6 275 56.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.8e-70 268.9 232 60.8
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 8.5e-67 258.1 232 60.8
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.4e-64 250.8 169 73.4
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 5.7e-63 245.4 179 68.2
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.5e-58 228.0 201 63.2
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 3.6e-57 226.1 252 57.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.2e-56 222.2 118 97.5
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.2e-53 213.0 164 70.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.6e-52 210.7 140 79.3
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.0e-51 208.0 171 68.4
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.4e-48 197.6 237 45.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-48 197.2 156 68.6
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 8.3e-46 188.3 149 64.4
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.9e-38 163.3 109 77.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.2e-29 133.3 84 79.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.5e-28 129.8 82 78.0
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 9.6e-26 121.7 64 92.2
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.2e-21 106.7 96 60.4
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.0e-16 89.7 66 75.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.2e-14 84.0 115 47.8
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 6.4e-14 82.4 88 55.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 4.2e-13 79.7 55 72.7
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.1e-13 79.0 53 75.5
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.2e-06 57.4 61 55.7


User provided reference genes

Program Settings