Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 0.0e+00 1234.9 624 100.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.4e-305 1051.6 624 85.4
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 4.4e-291 1004.2 694 75.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.0e-289 996.9 642 80.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.6e-288 995.7 617 82.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 8.3e-282 973.4 618 80.6
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.6e-267 925.2 605 78.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.3e-266 920.2 612 77.3
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 8.3e-266 920.2 604 78.1
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.9e-265 919.1 597 78.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.5e-264 914.8 602 77.7
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.5e-262 909.4 602 77.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.3e-262 908.3 602 77.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.1e-261 905.6 628 75.2
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.4e-260 902.9 601 77.5
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 5.2e-260 901.0 602 76.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.6e-259 898.7 612 75.5
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 5.8e-259 897.5 606 76.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.8e-259 897.5 616 75.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.3e-258 896.3 598 76.4
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 4.9e-258 894.4 621 75.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 6.4e-258 894.0 591 77.3
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.3e-258 893.6 612 75.3
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.1e-257 893.3 602 76.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.1e-257 893.3 611 74.6
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.4e-257 892.9 620 75.2
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.4e-257 891.0 610 74.9
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.1e-256 889.0 584 77.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.1e-256 889.0 601 75.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.3e-255 886.3 591 77.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.3e-255 886.3 599 76.6
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 5.1e-255 884.4 592 76.0
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 6.6e-255 884.0 598 75.8
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.6e-255 884.0 584 77.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-254 883.2 591 76.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.5e-254 882.1 591 76.5
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.3e-254 881.7 612 74.8
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 4.3e-254 881.3 603 75.6
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.3e-254 880.6 612 74.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 9.5e-254 880.2 605 74.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.5e-254 880.2 601 74.9
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 9.5e-254 880.2 610 74.9
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.1e-253 879.0 611 74.0
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 2.1e-253 879.0 600 75.0
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.1e-253 879.0 611 74.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.7e-253 877.9 591 76.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.1e-252 876.7 616 74.7
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.4e-252 876.3 611 74.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.4e-252 876.3 602 74.9
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.4e-252 876.3 610 74.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.4e-252 876.3 612 74.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.8e-252 875.9 591 76.0
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 4.0e-252 874.8 611 73.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.8e-252 874.0 600 75.3
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.0e-251 872.5 611 73.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.4e-251 871.7 603 75.0
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 5.8e-251 870.9 600 75.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.9e-250 868.6 597 74.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.2e-249 864.8 614 74.8
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.7e-248 862.1 596 74.5
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 7.8e-248 860.5 607 73.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.7e-247 859.4 601 74.2
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.3e-247 859.0 609 73.4
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.3e-247 859.0 575 77.9
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.9e-247 858.2 609 74.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 6.6e-247 857.4 597 74.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.1e-246 856.7 571 77.1
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.5e-246 856.3 599 74.0
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.2e-245 853.2 602 73.4
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.1e-244 850.1 608 73.5
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.1e-244 850.1 602 73.3
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.4e-244 849.0 573 76.6
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 5.3e-244 847.8 578 76.1
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.2e-243 846.7 624 71.8
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.5e-243 846.3 602 72.8
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.4e-243 845.1 602 73.1
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 7.6e-243 844.0 624 71.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.3e-241 837.0 619 70.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.6e-240 836.3 517 81.4
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.6e-239 830.9 571 73.4
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.5e-238 829.7 610 70.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.3e-238 828.6 579 73.4
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.3e-238 828.2 574 73.5
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.9e-236 820.8 616 70.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-235 820.1 606 70.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.4e-235 818.5 602 70.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.6e-235 817.4 603 71.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 7.6e-235 817.4 522 78.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.9e-234 815.5 610 70.5
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 9.3e-233 810.4 601 70.5
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-232 810.1 603 71.6
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 2.1e-232 809.3 611 69.7
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.6e-232 808.1 590 71.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 6.0e-232 807.7 595 71.1
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-231 807.0 614 69.7
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 2.3e-231 805.8 608 69.2
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 3.0e-231 805.4 606 69.6
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.0e-231 805.4 606 69.8
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 3.0e-231 805.4 607 70.3
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 8.7e-231 803.9 593 70.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.5e-230 802.4 593 70.7
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 3.3e-230 802.0 601 69.9
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.3e-230 801.6 593 70.5
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.3e-230 801.6 605 69.9
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 4.3e-230 801.6 594 69.9
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.4e-230 800.8 616 67.9
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.1e-229 799.3 546 75.8
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.8e-229 798.9 581 71.8
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.1e-228 797.0 611 69.2
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.0e-227 792.7 593 70.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.5e-227 791.6 593 69.8
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.5e-227 791.6 593 69.8
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.3e-221 773.5 619 65.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-221 773.5 602 68.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.5e-218 761.1 606 67.5
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.5e-217 758.1 600 68.8
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.6e-216 756.5 611 67.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 4.6e-216 755.0 554 72.4
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.9e-215 751.9 547 71.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.9e-215 751.9 547 71.3
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-214 749.6 522 73.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.3e-214 748.8 533 70.7
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 5.3e-212 741.5 599 66.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.1e-209 733.8 550 68.2
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-209 733.4 603 64.5
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 9.4e-209 730.7 609 63.1
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.7e-207 724.5 518 72.0
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.0e-206 723.0 586 66.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.0e-206 723.0 606 63.4
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.4e-204 716.1 514 71.8
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.7e-200 701.8 609 62.9
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.4e-199 700.3 607 63.9
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.3e-197 693.7 418 82.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-196 689.5 555 66.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.1e-196 689.1 410 82.4
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-194 683.3 608 61.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 9.4e-193 677.6 528 67.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 4.7e-192 675.2 410 81.7
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-191 674.1 538 65.4
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-187 660.6 405 81.0
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-185 653.3 581 61.1
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.5e-185 651.7 495 68.1
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.7e-184 649.4 512 66.8
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.1e-176 621.7 510 63.5
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 7.7e-171 604.7 470 70.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.8e-167 593.6 581 54.0
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.4e-156 556.6 378 74.1
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 3.9e-154 549.3 476 59.2
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 5.6e-153 545.4 524 58.2
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.9e-134 481.5 462 57.8
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.6e-131 474.2 340 72.6
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.4e-127 461.1 340 70.6
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.0e-106 391.7 326 64.4
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.1e-71 273.5 157 85.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 7.5e-65 252.7 154 83.1
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 3.0e-50 204.1 193 56.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.0e-49 201.4 193 55.4
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 7.5e-49 199.5 159 62.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 4.9e-48 196.8 159 62.3
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.3e-36 157.5 123 65.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.6e-35 154.1 98 78.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.0e-25 121.7 91 67.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-24 117.1 312 29.2
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-23 115.5 216 35.6
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.2e-22 112.5 93 60.2
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 8.1e-19 99.8 126 42.9
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 8.1e-19 99.8 115 48.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-18 99.0 191 34.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-16 91.7 190 34.7
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 2.9e-16 91.3 60 76.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.9e-15 88.6 86 53.5
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.2e-15 87.8 100 53.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.1e-12 79.3 70 68.6
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.5e-09 68.9 77 57.1
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.1e-06 58.5 85 42.4
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.1e-06 58.5 60 43.3


User provided reference genes

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