Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.4e-129 466.5 260 100.0
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.4e-65 253.1 193 83.9
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 3.8e-47 192.6 233 52.4
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.3e-36 156.8 233 43.3
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 5.2e-36 155.6 229 47.2
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.0e-35 153.7 227 42.7
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.7e-34 150.6 255 45.1
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.1e-33 146.4 255 44.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.1e-33 144.8 233 48.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 9.1e-33 144.8 229 43.7
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.0e-32 143.7 232 40.5
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.0e-31 141.4 228 40.8
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.7e-31 140.6 236 43.2
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 5.0e-31 139.0 232 40.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 6.5e-31 138.7 226 38.1
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.1e-30 137.9 228 49.6
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.5e-30 137.5 229 48.9
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 3.3e-30 136.3 226 37.6
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.2e-30 136.0 174 53.4
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 9.5e-30 134.8 233 39.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.2e-29 134.4 236 39.4
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 2.1e-29 133.7 230 39.6
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.8e-29 133.3 225 42.7
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.6e-29 132.9 252 36.1
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.0e-28 131.3 236 43.6
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.4e-28 131.0 234 37.6
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.8e-28 130.6 236 44.5
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-28 130.2 227 37.4
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-28 130.2 227 37.4
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.3e-28 130.2 228 40.4
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.0e-28 129.8 225 41.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 3.0e-28 129.8 230 43.5
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.0e-28 129.4 129 53.5
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 4.0e-28 129.4 241 34.9
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 8.9e-28 128.3 233 37.8
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 8.9e-28 128.3 233 37.8
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.2e-27 127.9 225 39.1
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.0e-27 127.1 232 39.7
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-27 126.7 233 39.5
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 3.4e-27 126.3 227 48.0
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 3.4e-27 126.3 233 39.9
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.4e-27 125.9 228 36.8
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 4.4e-27 125.9 232 36.6
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 7.5e-27 125.2 233 35.2
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 7.5e-27 125.2 241 34.9
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.3e-26 124.4 231 38.1
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.8e-26 123.2 118 56.8
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.7e-26 122.9 239 48.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 6.3e-26 122.1 237 42.6
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 1.1e-25 121.3 232 34.5
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.4e-25 120.9 246 36.6
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.8e-25 120.6 231 42.4
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 7.0e-25 118.6 221 40.3
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 7.0e-25 118.6 225 45.8
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-24 117.1 229 40.6
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-24 117.1 229 40.6
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.7e-24 116.7 224 36.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.7e-24 116.7 243 42.8
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 3.5e-24 116.3 226 42.0
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 4.5e-24 115.9 226 38.9
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 4.5e-24 115.9 221 37.6
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.5e-24 115.9 221 41.6
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 5.9e-24 115.5 223 42.2
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 7.8e-24 115.2 250 32.4
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.3e-23 114.4 256 32.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.7e-23 114.0 273 41.0
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.7e-23 114.0 230 42.6
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.7e-23 114.0 219 42.0
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-23 112.8 226 35.0
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.8e-23 112.8 123 52.0
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 8.6e-23 111.7 225 32.4
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 8.6e-23 111.7 230 42.2
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-22 110.9 223 36.8
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.5e-22 110.9 224 35.3
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.5e-22 110.9 223 36.8
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 1.5e-22 110.9 223 36.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.5e-22 110.9 224 35.3
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.9e-22 110.5 231 38.5
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.5e-22 110.2 239 34.7
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 5.6e-22 109.0 231 36.4
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 7.3e-22 108.6 229 36.7
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.2e-21 107.8 229 34.9
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 1.2e-21 107.8 235 39.1
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.6e-21 107.5 233 35.6
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.1e-21 107.1 235 39.6
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.0e-20 102.8 236 40.7
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.2e-20 102.4 219 34.7
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 6.8e-20 102.1 228 32.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.0e-19 100.5 209 34.4
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 2.0e-19 100.5 108 46.3
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.4e-19 99.8 225 36.4
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 7.5e-19 98.6 242 39.7
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 9.8e-19 98.2 238 45.0
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.7e-18 97.4 240 30.0
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.2e-18 97.1 114 45.6
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 3.7e-18 96.3 239 41.8
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.7e-18 96.3 109 44.0
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 6.4e-18 95.5 108 46.3
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 6.4e-18 95.5 240 32.1
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 6.4e-18 95.5 237 43.5
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 8.3e-18 95.1 122 39.3
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-17 94.7 227 43.6
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-17 93.6 229 43.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.4e-17 93.6 230 43.0
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.4e-17 92.4 126 42.9
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 7.0e-17 92.0 225 37.3
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 9.2e-17 91.7 290 27.6
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.6e-16 90.9 229 29.3
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.6e-16 90.9 227 42.7
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.6e-16 90.9 112 42.9
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.0e-16 90.5 126 42.1
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.0e-15 88.2 193 45.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.7e-15 87.4 113 39.8
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 3.0e-15 86.7 227 41.4
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 3.6e-13 79.7 88 39.8
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.8e-12 77.4 73 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 1.2e-11 74.7 73 45.2
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.4e-11 73.2 62 56.5
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 3.7e-10 69.7 75 38.7
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 4.1e-09 66.2 75 38.7
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 5.4e-09 65.9 44 65.9
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 9.2e-09 65.1 44 63.6
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.2e-09 65.1 44 63.6
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-08 64.7 44 61.4
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 2.1e-08 63.9 212 31.6
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.7e-08 63.5 44 61.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.7e-08 63.5 171 36.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.5e-08 63.2 250 27.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.0e-07 61.6 73 49.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.7e-07 60.8 44 56.8
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 5.0e-07 59.3 275 28.7
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.6e-07 58.9 79 43.0
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.1e-06 58.2 38 65.8
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 7.3e-06 55.5 194 32.5
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 9.5e-06 55.1 45 51.1


User provided reference genes

Program Settings