Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.9e-145 518.5 330 100.0
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 4.4e-64 249.2 193 83.9
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 2.0e-29 134.0 195 51.8
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.2e-18 98.2 194 39.7
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.8e-18 97.1 211 44.5
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.1e-17 95.1 193 37.3
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 3.1e-17 93.6 196 42.9
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 5.2e-17 92.8 211 43.6
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.5e-16 91.3 195 46.2
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 5.8e-16 89.4 195 46.7
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.3e-15 88.2 195 39.0
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.7e-15 87.8 190 44.7
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.7e-15 87.8 197 49.2
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.2e-15 87.4 194 36.1
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 2.9e-15 87.0 138 42.8
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 4.9e-15 86.3 198 34.8
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 8.4e-15 85.5 194 45.4
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.9e-14 84.3 129 51.9
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.9e-14 84.3 195 38.5
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 3.2e-14 83.6 200 37.0
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 5.4e-14 82.8 196 37.2
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-13 81.3 198 32.3
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-13 81.3 198 32.3
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 3.5e-13 80.1 199 33.7
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.6e-13 79.7 200 33.0
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.0e-12 78.6 193 38.9
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.3e-12 78.2 206 34.0
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.3e-12 77.4 194 35.6
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 5.1e-12 76.3 122 45.1
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 6.6e-12 75.9 199 33.2
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 8.6e-12 75.5 205 33.2
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 8.6e-12 75.5 193 32.6
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.1e-11 75.1 194 30.9
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.1e-11 75.1 193 37.3
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.1e-11 75.1 191 30.9
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.9e-11 74.3 194 39.2
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.5e-11 73.9 194 31.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.5e-11 73.9 196 32.1
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.3e-11 73.6 193 33.2
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 5.6e-11 72.8 191 30.4
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.2e-10 71.6 173 43.4
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.6e-10 71.2 195 31.3
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.6e-10 71.2 199 31.2
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-10 71.2 193 39.9
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.8e-10 70.5 202 32.2
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 3.6e-10 70.1 204 32.4
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 4.7e-10 69.7 194 37.1
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 8.1e-10 68.9 198 37.4
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 8.1e-10 68.9 194 29.9
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-09 68.6 211 31.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.4e-09 68.2 199 29.1
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.4e-09 68.2 193 40.4
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.4e-09 68.2 192 37.5
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.8e-09 67.8 77 53.2
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.8e-09 67.8 107 48.6
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.4e-09 67.4 200 36.0
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.1e-09 67.0 197 45.7
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.0e-09 66.6 141 47.5
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 8.9e-09 65.5 74 54.1
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 8.9e-09 65.5 192 36.5
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 3.4e-08 63.5 188 40.4
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.4e-08 63.5 200 34.0
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.4e-08 63.5 214 30.8
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 3.4e-08 63.5 196 31.6
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 3.4e-08 63.5 200 37.0
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.4e-08 63.5 210 30.0
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.4e-08 63.2 223 27.4
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.4e-08 63.2 78 48.7
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 7.6e-08 62.4 202 26.2
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 9.9e-08 62.0 190 38.4
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.7e-07 61.2 193 38.9
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 1.7e-07 61.2 192 41.7
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.9e-07 59.7 200 35.0
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 8.4e-07 58.9 197 27.9
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 8.4e-07 58.9 191 37.2
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 8.4e-07 58.9 127 41.7
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.1e-06 58.5 183 36.6
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 1.4e-06 58.2 181 32.6
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.9e-06 57.8 172 36.0
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.9e-06 57.8 196 31.6
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.4e-06 57.4 187 29.4
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 4.2e-06 56.6 191 35.1
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.4e-06 56.2 193 39.4
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 5.4e-06 56.2 91 45.1
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 7.1e-06 55.8 192 32.3
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 7.1e-06 55.8 193 30.6
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 7.1e-06 55.8 192 32.3
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 7.1e-06 55.8 192 32.3
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 7.1e-06 55.8 193 30.6
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 9.3e-06 55.5 203 29.6
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 9.3e-06 55.5 205 28.8
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 9.3e-06 55.5 239 37.2
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.3e-06 55.5 201 37.3
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 9.3e-06 55.5 78 44.9


User provided reference genes

Program Settings