Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 4.6e-38 160.6 75 100.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 5.9e-25 117.1 72 80.6
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.3e-24 115.9 77 79.2
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.1e-22 108.6 73 75.3
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.7e-22 108.2 72 76.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.7e-22 108.2 72 70.8
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.4e-21 105.9 71 76.1
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.9e-21 104.4 73 71.2
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 5.2e-21 104.0 75 69.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 6.7e-21 103.6 74 64.9
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 6.7e-21 103.6 71 67.6
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.5e-20 102.4 72 73.6
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.6e-20 101.7 73 69.9
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.3e-20 101.3 72 70.8
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.4e-20 100.9 72 70.8
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 5.7e-20 100.5 74 64.9
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 5.7e-20 100.5 73 69.9
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 5.7e-20 100.5 73 68.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 7.4e-20 100.1 74 68.9
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 7.4e-20 100.1 73 68.5
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 9.7e-20 99.8 70 72.9
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 9.7e-20 99.8 76 67.1
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.7e-19 99.0 83 61.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.7e-19 99.0 65 72.3
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 2.8e-19 98.2 70 70.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.8e-19 98.2 73 65.8
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.8e-19 98.2 72 69.4
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.3e-19 97.1 66 72.7
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 6.3e-19 97.1 74 60.8
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 6.3e-19 97.1 72 69.4
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 6.3e-19 97.1 75 65.3
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.4e-18 95.9 72 68.1
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-18 95.9 74 63.5
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.8e-18 95.5 72 65.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-18 95.5 74 62.2
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.8e-18 95.5 72 62.5
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.1e-18 94.7 69 69.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.1e-18 94.7 69 69.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 5.3e-18 94.0 73 65.8
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 7.0e-18 93.6 72 63.9
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.2e-17 92.8 76 67.1
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.2e-17 92.8 63 73.0
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.2e-17 92.8 79 65.8
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.6e-17 92.4 69 68.1
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.6e-17 92.4 80 62.5
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.0e-17 92.0 69 68.1
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 2.0e-17 92.0 73 63.0
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.6e-17 91.7 72 66.7
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.5e-17 91.3 75 62.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 5.9e-17 90.5 63 65.1
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 7.7e-17 90.1 65 72.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 7.7e-17 90.1 75 65.3
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-16 89.7 74 64.9
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.0e-16 89.7 72 65.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.0e-16 89.7 68 69.1
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.3e-16 89.4 65 67.7
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.7e-16 89.0 79 60.8
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 71 64.8
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.9e-16 88.2 68 64.7
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.8e-16 87.8 67 62.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 5.0e-16 87.4 76 64.5
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 6.5e-16 87.0 75 62.7
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 8.5e-16 86.7 72 65.3
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.1e-15 86.3 69 63.8
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.5e-15 85.9 67 61.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 1.9e-15 85.5 75 58.7
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.5e-15 85.1 75 60.0
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 3.2e-15 84.7 71 59.2
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 5.5e-15 84.0 75 60.0
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.5e-15 84.0 68 64.7
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 9.4e-15 83.2 69 58.0
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 9.4e-15 83.2 80 55.0
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 9.4e-15 83.2 69 58.0
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 69 58.0
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.2e-14 82.8 69 58.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.2e-14 82.8 67 59.7
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.6e-14 82.4 64 62.5
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.6e-14 81.3 66 63.6
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 6.1e-14 80.5 66 65.2
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.8e-13 79.0 74 55.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.3e-13 78.6 64 59.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.0e-13 78.2 75 60.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 4.0e-13 77.8 79 53.2
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 4.0e-13 77.8 79 53.2
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 4.0e-13 77.8 79 53.2
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.0e-13 77.8 66 60.6
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 5.2e-13 77.4 81 48.1
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 5.2e-13 77.4 80 51.2
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 5.2e-13 77.4 75 58.7
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.2e-13 77.4 75 58.7
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.2e-13 77.4 75 58.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 6.8e-13 77.0 79 53.2
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 6.8e-13 77.0 79 53.2
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 6.8e-13 77.0 79 53.2
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 6.8e-13 77.0 79 53.2
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 6.8e-13 77.0 81 54.3
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 8.8e-13 76.6 66 62.1
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 8.8e-13 76.6 76 53.9
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 8.8e-13 76.6 79 53.2
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 8.8e-13 76.6 71 52.1
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.5e-12 75.9 78 53.8
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-12 75.9 79 53.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-12 75.9 78 53.8
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.5e-12 75.9 76 53.9
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.5e-12 75.9 81 54.3
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 78 52.6
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.5e-12 75.9 76 52.6
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-12 75.1 79 51.9
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.6e-12 75.1 79 51.9
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.6e-12 75.1 79 53.2
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 3.4e-12 74.7 77 54.5
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.4e-12 74.7 77 51.9
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.4e-12 74.7 79 51.9
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 4.4e-12 74.3 77 50.6
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 4.4e-12 74.3 81 51.9
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 4.4e-12 74.3 77 50.6
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 4.4e-12 74.3 81 51.9
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 4.4e-12 74.3 77 50.6
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 5.7e-12 73.9 81 51.9
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 5.7e-12 73.9 83 45.8
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.7e-12 73.9 78 51.3
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 7.5e-12 73.6 79 51.9
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 7.5e-12 73.6 55 67.3
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 7.5e-12 73.6 75 53.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 7.5e-12 73.6 74 54.1
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 9.7e-12 73.2 82 52.4
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 9.7e-12 73.2 81 50.6
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 9.7e-12 73.2 81 50.6
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 9.7e-12 73.2 78 52.6
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.3e-11 72.8 85 50.6
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-11 72.8 80 48.8
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-11 72.4 90 48.9
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.7e-11 72.4 81 50.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-11 72.0 82 51.2
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-11 72.0 82 51.2
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-11 72.0 82 51.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 2.2e-11 72.0 82 51.2
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 2.2e-11 72.0 82 51.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.2e-11 72.0 83 51.8
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.2e-11 72.0 95 48.4
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 2.8e-11 71.6 82 50.0
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.8e-11 71.6 82 51.2
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.7e-11 71.2 82 51.2
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 3.7e-11 71.2 78 50.0
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 4.8e-11 70.9 87 51.7
AUR62002531 Chenopodium quinoa HOM05D004817 ORTHO05D005790 6.3e-11 70.5 33 93.9
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 6.3e-11 70.5 50 70.0
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 8.3e-11 70.1 82 48.8
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-10 69.7 83 48.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-10 69.7 83 48.2
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-10 68.9 72 50.0
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 3.6e-06 54.7 91 38.5


User provided reference genes

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