Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 3.9e-197 691.4 391 100.0
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 4.4e-63 246.1 232 55.2
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.7e-62 243.0 231 54.5
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.3e-62 241.9 200 61.5
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 3.1e-61 240.0 224 57.1
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.1e-61 239.6 246 56.1
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.2e-60 238.0 235 56.2
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.7e-59 234.2 219 57.1
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.8e-59 233.0 197 59.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.6e-57 227.6 227 54.2
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.6e-57 227.6 229 54.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.6e-57 227.6 227 54.6
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.1e-57 227.3 221 55.7
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.1e-57 227.3 217 54.4
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 3.6e-57 226.5 229 52.4
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 6.1e-57 225.7 227 53.3
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 8.0e-57 225.3 228 53.5
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.0e-56 224.9 217 53.0
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.0e-56 224.9 216 53.7
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.4e-56 224.6 233 52.4
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.8e-56 224.2 222 55.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.3e-56 223.8 218 52.8
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.0e-56 223.4 218 56.0
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.0e-56 223.0 218 53.7
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 4.0e-56 223.0 221 54.3
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 5.2e-56 222.6 230 52.6
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 5.2e-56 222.6 223 53.4
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 6.8e-56 222.2 235 51.9
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 8.8e-56 221.9 227 53.3
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.2e-55 221.5 218 52.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-55 221.1 214 51.9
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 3.4e-55 219.9 227 50.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.4e-55 219.9 216 52.3
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 3.4e-55 219.9 215 55.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 7.5e-55 218.8 229 53.7
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 9.8e-55 218.4 211 55.0
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.7e-54 217.6 218 52.8
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.8e-54 216.9 218 55.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.8e-54 216.9 218 52.3
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.8e-54 216.9 214 58.9
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 3.7e-54 216.5 220 51.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.7e-54 216.5 212 56.6
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.9e-54 216.1 218 54.1
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 6.3e-54 215.7 218 52.8
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-53 214.9 218 52.3
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.1e-53 214.9 220 51.8
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.4e-53 214.5 227 50.2
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.8e-53 214.2 212 54.7
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 1.8e-53 214.2 200 56.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 1.8e-53 214.2 230 53.0
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.4e-53 213.8 218 52.3
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.1e-53 213.4 211 55.5
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.1e-53 213.0 218 52.3
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 9.2e-53 211.8 216 53.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.2e-52 211.5 218 51.4
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.2e-52 211.5 232 54.3
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.2e-52 211.5 219 51.1
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-52 211.1 218 51.8
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.6e-52 211.1 229 50.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.0e-52 210.7 222 54.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-52 209.9 225 57.3
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 4.5e-52 209.5 195 55.4
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 5.9e-52 209.1 245 47.3
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 5.9e-52 209.1 252 45.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 5.9e-52 209.1 222 54.1
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.0e-51 208.4 213 54.0
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.0e-51 208.4 227 55.1
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-51 208.4 227 55.9
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-51 208.4 227 55.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.3e-51 208.0 211 54.5
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.3e-51 208.0 215 51.6
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.9e-51 206.8 228 50.4
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.8e-51 206.5 227 48.9
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 5.0e-51 206.1 213 53.5
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 6.6e-51 205.7 211 50.2
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 8.6e-51 205.3 230 51.7
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 8.6e-51 205.3 227 53.7
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.1e-50 204.9 217 53.0
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.5e-50 204.5 227 48.5
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.5e-50 203.8 222 49.1
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 2.5e-50 203.8 240 45.4
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.3e-50 203.4 230 59.1
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.3e-50 203.4 213 52.6
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 4.3e-50 203.0 232 51.7
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.3e-50 203.0 209 52.2
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 4.3e-50 203.0 217 52.5
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 4.3e-50 203.0 214 57.5
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 5.6e-50 202.6 215 50.2
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 7.3e-50 202.2 215 59.5
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 7.3e-50 202.2 219 53.4
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.2e-49 201.4 214 58.4
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-49 200.7 220 50.9
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.1e-49 200.7 214 53.3
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.7e-49 199.5 222 50.9
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 8.0e-49 198.7 224 49.1
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 8.0e-49 198.7 219 51.1
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.0e-48 198.4 231 47.6
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.4e-48 198.0 212 52.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.4e-48 198.0 226 49.1
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.8e-48 197.6 222 57.7
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.8e-48 197.6 230 56.5
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.8e-48 197.6 201 53.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.0e-48 196.8 255 47.5
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.0e-48 196.8 255 49.4
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.0e-48 196.8 228 52.2
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 8.9e-48 195.3 201 62.2
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 2.6e-47 193.7 214 56.5
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 4.4e-47 193.0 139 65.5
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 7.5e-47 192.2 228 47.4
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 9.8e-47 191.8 210 49.0
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-46 190.7 228 47.4
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.9e-46 190.3 202 50.0
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 2.4e-45 187.2 199 51.8
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.2e-45 186.8 206 50.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.1e-45 186.4 156 58.3
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 4.1e-45 186.4 222 48.6
Hund08734 Selenicereus undatus HOM05D000691 ORTHO05D000378 7.0e-45 185.7 145 83.4
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.2e-44 184.9 190 51.1
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 3.5e-44 183.3 219 42.5
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 5.9e-44 182.6 219 51.1
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.7e-43 181.0 219 50.2
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.7e-43 181.0 202 50.0
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.6e-43 179.1 221 45.7
Hund19828 Selenicereus undatus HOM05D000691 ORTHO05D000378 1.1e-42 178.3 149 75.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.5e-42 177.2 220 45.9
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.3e-42 176.4 216 45.8
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.3e-42 176.4 198 45.5
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 7.3e-42 175.6 218 49.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.2e-41 174.9 207 47.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.6e-41 174.5 224 44.6
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 8.0e-41 172.2 219 43.8
Hund01785 Selenicereus undatus HOM05D000691 ORTHO05D000378 8.0e-41 172.2 130 83.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.4e-40 171.4 129 65.1
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.3e-40 170.6 201 42.8
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.1e-40 170.2 275 38.2
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.0e-40 169.9 211 53.1
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 5.2e-40 169.5 212 41.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 6.8e-40 169.1 220 52.7
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 8.9e-40 168.7 234 42.7
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.0e-39 167.5 227 42.3
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 2.0e-39 167.5 153 54.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.4e-39 166.8 225 44.4
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 5.8e-39 166.0 220 52.3
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.8e-39 166.0 225 43.1
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 9.8e-39 165.2 225 44.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 5.4e-37 159.5 230 40.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.7e-36 157.1 213 41.3
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.0e-36 156.0 221 40.3
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.0e-36 156.0 221 40.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.3e-35 154.1 208 43.8
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.8e-33 147.1 162 50.0
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.9e-32 142.1 148 50.7
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.4e-31 139.8 147 50.3
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.7e-30 137.9 213 39.9
Hund17998 Selenicereus undatus HOM05D000691 ORTHO05D000378 4.1e-29 133.3 118 76.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 4.6e-28 129.8 251 40.6
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 8.6e-27 125.6 113 54.0
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-26 125.2 170 42.4
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.5e-26 124.0 148 59.5
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.0e-23 114.4 129 43.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-21 108.6 221 34.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.9e-21 107.8 166 42.2
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.4e-21 106.3 171 37.4
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 9.2e-21 105.5 208 35.1
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.7e-19 101.3 147 40.8
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.3e-18 96.7 149 40.3
Hund23384 Selenicereus undatus HOM05D000691 ORTHO05D000378 8.1e-17 92.4 153 49.0
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-16 92.0 67 65.7
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.2e-16 89.7 68 57.4
Hund25787 Selenicereus undatus HOM05D007023 ORTHO05D008684 4.4e-15 86.7 152 47.4
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.4e-13 81.6 63 60.3
Hund18526 Selenicereus undatus HOM05D000691 ORTHO05D000378 1.4e-13 81.6 146 42.5
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.4e-13 80.9 67 52.2
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.0e-11 73.9 111 42.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.5e-10 70.9 154 32.5
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.5e-07 60.1 37 78.4
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 1.3e-06 58.5 132 40.9
Hund22953 Selenicereus undatus HOM05D022163 ORTHO05D000378 1.7e-06 58.2 148 35.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 3.8e-06 57.0 118 32.2


User provided reference genes

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