Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 6.2e-143 510.8 256 100.0
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 3.5e-77 292.4 235 64.3
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 4.6e-77 292.0 235 63.8
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 1.3e-76 290.4 236 64.0
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 1.5e-75 287.0 236 62.7
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.5e-75 286.2 241 61.0
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 3.3e-75 285.8 237 62.9
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 4.3e-75 285.4 247 59.1
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 7.3e-75 284.6 184 73.9
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 9.5e-75 284.3 218 66.5
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 1.6e-74 283.5 228 62.3
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 3.6e-74 282.3 240 63.3
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 8.0e-74 281.2 236 61.4
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 1.8e-73 280.0 190 68.9
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.3e-73 279.6 237 62.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 3.1e-73 279.3 235 61.7
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 3.1e-73 279.3 239 63.2
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 4.0e-73 278.9 165 78.2
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 4.0e-73 278.9 239 59.8
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 5.2e-73 278.5 237 60.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 8.9e-73 277.7 237 61.6
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.2e-72 277.3 190 67.9
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 1.5e-72 276.9 240 62.9
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.5e-72 276.9 188 70.7
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.5e-72 276.9 192 68.8
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 2.0e-72 276.6 244 60.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 4.4e-72 275.4 172 75.0
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 7.5e-72 274.6 174 72.4
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 7.5e-72 274.6 230 60.4
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 7.5e-72 274.6 239 61.1
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 9.8e-72 274.2 183 70.5
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.3e-71 273.9 183 70.5
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.7e-71 273.5 176 72.7
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 1.7e-71 273.5 243 59.3
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 1.7e-71 273.5 199 68.3
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 2.9e-71 272.7 241 60.6
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 4.9e-71 271.9 239 60.3
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 4.9e-71 271.9 233 59.2
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 6.4e-71 271.6 188 70.2
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 6.4e-71 271.6 238 60.5
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 8.3e-71 271.2 236 61.4
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 8.3e-71 271.2 197 66.5
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 1.4e-70 270.4 176 72.2
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 2.4e-70 269.6 178 70.8
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 3.2e-70 269.2 216 63.9
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 3.2e-70 269.2 185 69.7
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 4.1e-70 268.9 188 68.1
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 5.4e-70 268.5 244 58.2
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 5.4e-70 268.5 189 67.7
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 9.2e-70 267.7 234 59.4
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 1.6e-69 266.9 230 60.9
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 3.5e-69 265.8 225 59.6
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 3.5e-69 265.8 157 77.1
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.0e-68 264.2 178 70.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.0e-68 264.2 230 59.6
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.0e-68 264.2 171 71.9
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 1.3e-68 263.8 244 58.2
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.7e-68 263.5 169 73.4
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 2.3e-68 263.1 188 67.6
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 3.0e-68 262.7 223 59.2
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 5.1e-68 261.9 223 59.2
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 5.1e-68 261.9 223 59.2
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 8.6e-68 261.2 226 61.1
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 1.5e-67 260.4 225 58.7
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 4.3e-67 258.8 223 58.3
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 4.3e-67 258.8 223 58.3
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 7.3e-67 258.1 162 72.2
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 7.3e-67 258.1 162 71.6
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 2.1e-66 256.5 222 59.5
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.6e-66 255.8 180 65.6
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 6.2e-66 255.0 237 56.5
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 4.0e-65 252.3 180 66.7
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 8.9e-65 251.1 194 62.4
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 2.0e-64 250.0 176 67.0
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.6e-64 249.6 145 77.9
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 4.4e-64 248.8 247 57.1
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 4.9e-63 245.4 159 69.8
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 8.3e-63 244.6 158 72.8
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 3.2e-62 242.7 159 69.8
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 1.7e-60 236.9 173 66.5
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 3.0e-60 236.1 153 68.6
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 2.5e-59 233.0 138 75.4
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 5.6e-59 231.9 262 49.6
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.6e-58 230.3 218 56.4
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 2.8e-58 229.6 243 52.7
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 2.8e-58 229.6 241 51.9
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 2.4e-57 226.5 159 66.0
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 7.8e-53 211.5 124 78.2
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 6.2e-50 201.8 111 85.6
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 1.5e-48 197.2 158 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.3e-47 194.1 140 64.3
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 1.6e-45 187.2 183 51.4
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.3e-44 183.3 107 76.6
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 6.6e-44 181.8 196 51.0
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 1.5e-43 180.6 111 72.1
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 7.3e-43 178.3 197 48.7
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 9.6e-43 177.9 107 77.6
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 1.9e-38 163.7 141 58.9
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.1e-37 160.2 90 82.2
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 4.6e-37 159.1 100 71.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.7e-34 149.4 77 89.6
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 3.3e-27 126.3 92 65.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 7.4e-27 125.2 139 54.0
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 5.5e-22 109.0 87 59.8
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 4.3e-19 99.4 113 44.2
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 9.7e-19 98.2 79 57.0
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 4.8e-18 95.9 49 83.7
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 6.3e-18 95.5 232 31.5
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 8.2e-18 95.1 188 33.5
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.4e-17 93.6 218 32.1
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.2e-16 91.3 213 31.9
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.2e-16 91.3 152 35.5
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.4e-16 89.7 157 36.3
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 4.5e-16 89.4 230 30.4
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 7.7e-16 88.6 215 30.7
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.0e-15 88.2 132 35.6
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.0e-15 88.2 127 37.0
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.3e-15 87.8 170 31.8
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.3e-15 87.8 150 34.7
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.3e-15 87.8 238 29.0
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.3e-15 87.8 132 35.6
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.3e-15 87.8 132 35.6
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.3e-15 87.8 173 32.4
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.7e-15 87.4 214 29.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.9e-15 86.7 170 32.4
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 1.4e-14 84.3 132 34.8
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.4e-14 84.3 234 29.9
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.9e-14 84.0 232 28.4
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 7.2e-14 82.0 241 29.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 7.9e-13 78.6 152 32.9
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 7.9e-13 78.6 152 32.9
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 7.9e-13 78.6 211 29.9
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 7.9e-13 78.6 231 29.4
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 7.9e-13 78.6 49 71.4
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.0e-12 78.2 176 30.7
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.8e-12 77.4 207 27.5
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 3.9e-12 76.3 233 28.8
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.9e-12 76.3 131 37.4
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 6.7e-12 75.5 164 32.3
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 6.7e-12 75.5 122 41.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 7.4e-11 72.0 234 28.2
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 7.4e-11 72.0 234 28.2
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.4e-09 67.8 146 30.1
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.4e-09 67.0 69 49.3
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 4.1e-09 66.2 39 71.8
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 2.6e-08 63.5 101 43.6
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 1.7e-07 60.8 104 42.3
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.2e-07 60.5 174 31.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-06 57.8 83 37.3
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 4.2e-06 56.2 148 26.4
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 4.2e-06 56.2 148 27.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 4.2e-06 56.2 80 37.5
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 7.2e-06 55.5 160 26.9
BcaB03g14405 Brassica carinata HOM05D033897 ORTHO05D032280 9.4e-06 55.1 112 33.0
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 9.4e-06 55.1 149 27.5


User provided reference genes

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