Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.4e-154 549.7 294 100.0
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 5.0e-112 408.3 285 73.7
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 2.5e-111 406.0 294 69.0
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 3.0e-109 399.1 285 72.6
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 3.0e-109 399.1 288 69.1
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 6.8e-109 397.9 290 68.6
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 6.8e-109 397.9 231 79.7
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 6.8e-109 397.9 227 81.5
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 9.8e-108 394.0 283 68.9
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 9.8e-108 394.0 284 68.7
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.7e-107 393.3 286 68.9
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 2.2e-107 392.9 240 77.5
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 2.8e-107 392.5 282 67.7
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 6.3e-107 391.3 237 77.6
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 8.3e-107 391.0 288 66.3
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 1.4e-106 390.2 250 74.0
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.4e-106 390.2 290 67.6
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 1.8e-106 389.8 284 70.4
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 1.8e-106 389.8 228 78.9
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 4.1e-106 388.7 249 74.3
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 4.1e-106 388.7 300 65.3
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 5.4e-106 388.3 235 77.0
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 5.4e-106 388.3 284 66.9
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 7.0e-106 387.9 236 75.0
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.2e-105 387.1 290 66.6
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 1.6e-105 386.7 249 73.9
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.6e-105 386.7 226 78.8
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 2.0e-105 386.3 288 65.3
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.0e-105 386.3 288 65.6
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.9e-105 384.8 288 64.9
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 5.9e-105 384.8 296 65.5
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 5.9e-105 384.8 292 66.1
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.3e-104 383.6 286 69.2
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 1.3e-104 383.6 288 66.0
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.7e-104 383.3 248 73.4
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.3e-104 382.9 288 64.6
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 2.9e-104 382.5 226 79.2
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 2.9e-104 382.5 291 65.6
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.8e-104 382.1 288 64.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 5.0e-104 381.7 241 74.7
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 6.6e-104 381.3 221 80.1
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 1.1e-103 380.6 245 71.8
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.1e-103 380.6 248 71.8
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.5e-103 380.2 286 68.2
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.9e-103 379.8 247 73.7
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 2.5e-103 379.4 288 65.6
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.5e-103 379.4 227 78.0
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.5e-103 379.4 285 67.0
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.3e-103 379.0 223 79.8
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 3.3e-103 379.0 237 73.8
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 3.3e-103 379.0 288 65.3
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 4.3e-103 378.6 250 73.2
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 4.3e-103 378.6 288 65.6
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 5.6e-103 378.3 242 73.1
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 5.6e-103 378.3 236 73.7
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 5.6e-103 378.3 286 67.5
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 7.3e-103 377.9 224 77.2
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.6e-102 376.7 289 67.1
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.6e-102 376.7 225 77.3
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 2.1e-102 376.3 248 71.8
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 6.1e-102 374.8 295 64.4
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 8.0e-102 374.4 231 75.8
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 1.0e-101 374.0 293 68.9
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 2.3e-101 372.9 232 74.1
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.0e-101 372.5 241 72.2
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 5.2e-101 371.7 226 74.3
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 6.8e-101 371.3 248 69.8
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.2e-100 370.5 236 74.6
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.2e-100 370.5 234 75.2
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.5e-100 370.2 282 65.2
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 2.0e-100 369.8 242 70.7
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 3.4e-100 369.0 226 74.3
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 5.7e-100 368.2 249 69.1
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 5.7e-100 368.2 249 69.1
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.7e-99 366.7 241 69.3
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.7e-99 365.5 224 73.2
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 6.4e-99 364.8 243 72.4
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 8.3e-99 364.4 282 61.3
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 1.8e-98 363.2 248 67.3
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 2.4e-98 362.8 237 72.2
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 3.2e-98 362.5 286 65.0
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 3.5e-97 359.0 242 69.4
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 5.0e-96 355.1 224 75.4
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 8.6e-96 354.4 224 75.0
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 8.6e-96 354.4 244 71.7
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 4.3e-95 352.1 227 74.0
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 7.3e-95 351.3 271 62.0
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.7e-94 348.6 292 61.3
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 9.8e-92 340.9 227 70.9
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 4.9e-91 338.6 234 70.5
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 1.4e-90 337.0 225 72.9
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 4.1e-90 335.5 236 67.4
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.0e-88 330.9 233 68.2
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 3.9e-88 328.9 231 68.4
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.9e-88 328.9 193 79.8
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.1e-87 327.4 247 64.4
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 3.3e-87 325.9 246 65.0
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.2e-86 323.9 219 68.0
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 3.4e-84 315.8 226 66.8
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 4.1e-82 308.9 224 65.2
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 6.0e-81 305.1 257 61.1
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 1.3e-80 303.9 238 60.5
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.7e-80 303.5 235 60.9
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 3.0e-80 302.8 235 60.4
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 3.9e-80 302.4 251 62.5
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 1.5e-79 300.4 251 62.2
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 1.2e-78 297.4 262 58.8
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 6.2e-78 295.0 226 65.5
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.3e-77 293.1 178 76.4
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 6.4e-75 285.0 239 65.7
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.1e-74 282.3 170 76.5
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 4.1e-74 282.3 242 57.4
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.6e-73 280.4 167 79.0
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 7.8e-73 278.1 176 73.9
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.6e-68 263.1 163 74.2
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 1.3e-67 260.8 219 58.4
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 2.1e-65 253.4 161 73.9
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 6.0e-57 225.3 131 77.1
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 3.9e-56 222.6 152 68.4
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 9.6e-55 218.0 136 69.9
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.4e-50 203.4 203 55.7
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 3.9e-48 196.1 135 64.4
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 5.6e-47 192.2 214 45.8
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.6e-46 190.7 167 55.7
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 1.2e-44 184.5 171 57.9
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 1.1e-42 177.9 135 62.2
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 5.5e-42 175.6 210 45.7
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 1.2e-41 174.5 162 59.3
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.5e-31 141.0 90 71.1
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 2.9e-27 126.7 150 51.3
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 6.3e-22 109.0 90 55.6
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.8e-21 107.5 133 48.1
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.1e-21 105.1 127 48.0
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.7e-17 93.6 80 56.2
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 5.3e-13 79.3 121 36.4
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 5.9e-12 75.9 77 50.6
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 2.5e-10 70.5 117 35.9
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 3.0e-08 63.5 95 36.8
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 8.8e-08 62.0 54 55.6
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 6.3e-06 55.8 60 43.3


User provided reference genes

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