Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.1e-110 403.3 204 100.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.8e-93 345.5 204 86.3
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.9e-92 340.5 199 84.9
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-91 340.1 199 84.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.7e-90 335.1 201 83.1
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 3.5e-88 328.6 204 78.9
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.0e-87 327.0 205 78.0
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.6e-86 321.2 202 77.7
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.6e-85 319.7 199 77.4
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.1e-85 319.3 204 77.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.8e-85 318.9 204 77.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 4.7e-85 318.2 200 78.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.2e-85 317.8 204 77.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 6.2e-85 317.8 202 76.7
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.8e-84 316.2 204 77.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.8e-84 316.2 204 76.5
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.8e-84 316.2 199 77.4
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.8e-84 316.2 204 77.0
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.1e-84 315.5 200 77.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 4.0e-84 315.1 200 77.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.0e-84 315.1 202 77.7
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-83 313.2 204 75.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.5e-83 313.2 199 76.4
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.0e-83 312.8 201 75.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.0e-83 312.8 199 76.9
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.0e-83 312.8 202 75.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.0e-83 312.8 204 76.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.6e-83 312.4 203 73.4
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-83 312.4 204 76.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-83 312.4 204 76.5
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-83 312.4 204 76.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 2.6e-83 312.4 202 76.2
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.4e-83 312.0 204 76.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.4e-83 311.6 204 74.5
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.8e-83 311.2 200 74.5
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 7.6e-83 310.8 202 75.2
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 7.6e-83 310.8 202 75.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.3e-82 310.1 202 74.8
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.7e-82 309.7 200 75.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.7e-82 309.7 201 74.6
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.2e-82 309.3 202 74.3
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.9e-82 308.9 201 76.1
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.9e-82 308.9 204 77.5
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.9e-82 308.9 201 74.1
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.9e-82 308.9 201 74.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.9e-82 308.9 201 74.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.7e-82 308.5 200 76.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 3.7e-82 308.5 200 77.0
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 4.9e-82 308.1 202 75.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 6.4e-82 307.8 200 75.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.4e-82 307.8 199 75.9
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 6.4e-82 307.8 202 75.7
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 8.4e-82 307.4 204 74.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.1e-81 307.0 201 75.6
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.4e-81 306.6 205 75.1
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.4e-81 306.6 203 71.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.4e-81 306.6 202 76.2
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.4e-81 306.6 200 74.0
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.4e-81 306.6 199 76.9
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.9e-81 306.2 203 72.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.9e-81 306.2 200 76.5
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.9e-81 306.2 201 75.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.4e-81 305.8 204 74.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 3.2e-81 305.4 207 74.4
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.1e-81 304.3 200 73.5
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.2e-81 303.9 201 75.1
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 9.2e-81 303.9 204 74.5
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.6e-80 303.1 204 75.0
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.6e-80 303.1 204 72.1
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.1e-80 302.8 199 74.4
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 3.5e-80 302.0 202 73.3
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.5e-80 302.0 201 74.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 7.8e-80 300.8 199 74.4
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.0e-79 300.4 234 67.5
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.3e-79 299.3 201 74.1
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.3e-79 299.3 201 74.1
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 5.1e-79 298.1 202 72.8
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-78 297.0 201 75.6
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 3.3e-78 295.4 204 71.6
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.6e-78 294.7 196 75.5
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.2e-77 293.5 199 72.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 3.6e-77 292.0 203 71.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.6e-77 292.0 202 73.8
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.7e-77 291.6 199 72.4
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 4.7e-77 291.6 199 72.9
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.1e-76 290.4 199 72.4
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.1e-76 290.4 183 77.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-76 290.0 199 72.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.4e-76 290.0 199 72.4
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.4e-76 290.0 199 72.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.4e-76 289.3 201 71.6
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.4e-76 289.3 199 70.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.0e-76 288.5 199 72.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 6.8e-76 287.7 199 72.4
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 6.8e-76 287.7 204 71.1
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 6.8e-76 287.7 199 71.9
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 6.8e-76 287.7 199 71.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 6.8e-76 287.7 204 71.1
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 6.8e-76 287.7 199 71.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 8.9e-76 287.3 199 71.4
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 8.9e-76 287.3 204 70.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.2e-75 287.0 199 72.9
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.5e-75 286.6 199 71.9
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.0e-75 286.2 200 70.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.0e-75 286.2 199 71.4
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.9e-75 283.9 201 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.4e-73 280.0 203 70.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.4e-73 280.0 201 70.1
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.9e-73 279.6 201 70.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.4e-73 279.3 197 70.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 3.2e-73 278.9 176 76.1
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 9.3e-73 277.3 199 67.3
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.2e-72 276.9 200 70.5
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.6e-72 275.0 183 75.4
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 7.8e-72 274.2 199 66.3
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.0e-71 273.9 191 67.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.0e-71 273.9 199 68.8
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.9e-71 271.9 199 70.9
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.5e-70 270.0 211 65.9
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.1e-69 264.2 201 68.2
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.0e-68 261.9 200 66.0
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.7e-64 249.2 191 68.6
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.3e-63 246.1 215 60.5
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.9e-62 243.0 199 63.3
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 7.4e-62 241.1 167 71.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.8e-61 239.2 202 61.9
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.4e-60 236.9 202 61.9
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 6.9e-60 234.6 201 62.2
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 3.4e-59 232.3 204 60.8
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.3e-55 219.5 213 54.5
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 7.4e-54 214.5 209 55.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 7.4e-54 214.5 137 75.9
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.6e-54 214.2 149 71.1
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.2e-51 207.2 136 72.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 6.5e-50 201.4 149 65.8
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.3e-47 193.0 146 64.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 8.2e-45 184.5 107 78.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-43 180.6 147 63.9
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.5e-42 174.9 131 67.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-41 173.7 201 49.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.5e-38 162.9 133 63.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.8e-37 158.7 85 83.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 9.0e-36 154.5 118 71.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 4.6e-32 142.1 121 59.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 3.1e-28 129.4 157 48.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.2e-26 123.2 136 51.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.1e-24 115.2 75 76.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 4.1e-20 102.4 67 77.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.3e-20 102.1 171 36.8
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.7e-19 98.2 53 84.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.7e-19 98.2 53 84.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 6.5e-18 95.1 93 54.8
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 4.2e-17 92.4 66 74.2
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 4.2e-17 92.4 69 71.0
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.2e-17 92.4 64 73.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.7e-16 89.7 90 51.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.7e-13 80.5 67 67.2
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 8.2e-13 78.2 46 87.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.1e-12 76.3 44 79.5
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 3.1e-12 76.3 44 79.5
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-11 74.3 44 77.3
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.6e-11 73.9 44 77.3
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.0e-11 73.6 44 77.3
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.5e-11 72.8 44 75.0
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 4.5e-11 72.4 44 72.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.9e-11 72.0 64 59.4
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 5.5e-09 65.5 62 53.2
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.4e-06 56.2 176 26.7


User provided reference genes

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