Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 6.3e-88 327.4 165 100.0
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.8e-71 272.7 162 80.9
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.0e-69 266.9 161 78.3
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.3e-69 266.5 161 77.6
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 5.0e-69 264.6 161 78.3
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.1e-68 263.5 158 79.7
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.5e-68 263.1 162 79.0
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 1.9e-68 262.7 155 81.9
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 2.5e-68 262.3 160 79.4
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.3e-68 261.9 156 81.4
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 5.6e-68 261.2 160 79.4
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 7.3e-68 260.8 162 79.0
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.2e-67 260.0 163 77.3
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.6e-67 259.6 160 79.4
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 2.1e-67 259.2 158 77.8
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 2.8e-67 258.8 156 78.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 2.8e-67 258.8 156 78.8
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 2.8e-67 258.8 156 79.5
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 3.6e-67 258.5 165 78.2
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.6e-67 258.5 155 81.3
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 4.7e-67 258.1 161 75.2
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 4.7e-67 258.1 161 78.9
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 6.1e-67 257.7 159 78.6
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 8.0e-67 257.3 158 79.1
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 8.0e-67 257.3 158 79.1
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.0e-66 256.9 161 76.4
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.0e-66 256.9 155 81.9
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.4e-66 256.5 161 79.5
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 1.4e-66 256.5 158 79.7
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.4e-66 256.5 159 78.6
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.8e-66 256.1 165 77.0
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.3e-66 255.8 158 78.5
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 2.3e-66 255.8 161 78.9
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.3e-66 255.8 156 78.2
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.3e-66 255.8 162 78.4
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.0e-66 255.4 157 77.7
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 3.0e-66 255.4 157 77.7
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 3.0e-66 255.4 158 76.6
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 6.8e-66 254.2 154 77.9
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 8.9e-66 253.8 155 76.8
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 8.9e-66 253.8 159 80.5
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.2e-65 253.4 158 75.9
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.0e-65 252.7 158 76.6
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 2.0e-65 252.7 156 75.6
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 2.0e-65 252.7 157 77.1
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 2.6e-65 252.3 158 77.8
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 4.4e-65 251.5 154 77.3
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 7.5e-65 250.8 158 77.2
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 7.5e-65 250.8 161 76.4
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 7.5e-65 250.8 155 79.4
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 9.8e-65 250.4 152 78.9
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 9.8e-65 250.4 158 75.3
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.3e-64 250.0 162 75.9
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.3e-64 250.0 162 74.7
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 4.9e-64 248.1 158 75.9
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 6.4e-64 247.7 156 74.4
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.1e-63 246.9 148 78.4
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 2.4e-63 245.7 155 76.8
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 3.2e-63 245.4 159 76.1
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.2e-63 245.4 161 73.3
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 3.2e-63 245.4 154 76.6
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 4.1e-63 245.0 151 80.1
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 5.4e-63 244.6 151 78.1
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 7.0e-63 244.2 160 74.4
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 7.0e-63 244.2 158 74.1
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.2e-62 243.4 159 75.5
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.2e-62 243.4 159 75.5
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.6e-62 243.0 151 76.2
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.6e-62 243.0 149 77.9
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.0e-62 242.7 179 69.8
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 2.7e-62 242.3 149 76.5
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 2.7e-62 242.3 159 74.8
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 2.7e-62 242.3 158 74.1
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 3.5e-62 241.9 159 74.2
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 3.5e-62 241.9 159 74.2
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 3.5e-62 241.9 159 74.8
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 3.5e-62 241.9 159 74.2
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 3.5e-62 241.9 157 75.2
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 4.6e-62 241.5 159 74.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 4.6e-62 241.5 152 77.0
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 5.9e-62 241.1 159 74.2
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 5.9e-62 241.1 159 74.2
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 5.9e-62 241.1 143 81.8
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 1.7e-61 239.6 150 78.0
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 2.3e-61 239.2 159 74.2
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.3e-61 239.2 155 78.1
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 2.3e-61 239.2 156 75.6
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 1.1e-60 236.9 156 72.4
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 3.3e-60 235.3 156 74.4
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 9.5e-60 233.8 155 76.8
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 2.8e-59 232.3 190 64.2
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 6.2e-59 231.1 149 73.8
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 1.0e-58 230.3 162 69.8
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.2e-56 222.6 149 71.1
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 1.4e-55 219.9 181 63.0
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 4.7e-51 204.9 154 63.0
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.8e-50 201.1 170 61.2
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 1.5e-44 183.3 158 57.0
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.4e-42 176.8 112 77.7
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 2.3e-42 176.0 119 70.6
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 8.9e-42 174.1 89 88.8
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.6e-41 172.6 160 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 9.9e-41 170.6 153 55.6
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.7e-40 169.9 146 57.5
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.2e-40 169.5 113 73.5
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 6.4e-40 167.9 96 80.2
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 4.1e-39 165.2 159 52.2
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 7.8e-38 161.0 152 55.9
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 7.8e-38 161.0 261 41.8
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 2.0e-33 146.4 150 47.3
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 7.8e-30 134.4 83 77.1
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 1.8e-26 123.2 140 42.9
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.3e-20 102.1 74 64.9
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.2e-16 89.7 63 66.7
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.1e-15 87.4 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.6e-14 83.6 88 50.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 6.0e-14 81.6 49 73.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.3e-13 80.5 55 69.1
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 6.7e-13 78.2 45 75.6
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.2e-11 71.6 52 73.1
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 8.1e-11 71.2 139 33.1
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 2.0e-09 66.6 37 78.4
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 1.3e-08 63.9 37 73.0


User provided reference genes

Program Settings