Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11851 Selenicereus undatus HOM05D004588 ORTHO05D005365 3.8e-28 127.5 65 100.0
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 1.0e-20 102.8 65 80.0
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 1.1e-19 99.4 65 75.4
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 1.4e-19 99.0 65 75.4
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 1.9e-19 98.6 63 77.8
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 5.5e-19 97.1 65 76.9
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 7.1e-19 96.7 65 73.8
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 9.3e-19 96.3 62 77.4
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 9.3e-19 96.3 65 73.8
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 2.7e-18 94.7 65 73.8
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 4.6e-18 94.0 61 75.4
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 4.6e-18 94.0 65 72.3
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 6.0e-18 93.6 65 70.8
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 1.0e-17 92.8 61 75.4
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 1.8e-17 92.0 63 69.8
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 5.1e-17 90.5 66 72.7
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 6.7e-17 90.1 54 77.8
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 6.7e-17 90.1 65 69.2
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 6.7e-17 90.1 65 69.2
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 6.7e-17 90.1 45 91.1
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 1.1e-16 89.4 57 77.2
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 1.1e-16 89.4 65 70.8
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.5e-16 89.0 66 69.7
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 1.5e-16 89.0 63 68.3
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 1.9e-16 88.6 56 75.0
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.9e-16 88.6 66 69.7
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 2.5e-16 88.2 48 83.3
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 2.5e-16 88.2 63 71.4
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 3.3e-16 87.8 46 87.0
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 3.3e-16 87.8 46 87.0
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.3e-16 87.8 63 66.7
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 4.3e-16 87.4 66 71.2
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 4.3e-16 87.4 63 71.4
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 4.3e-16 87.4 45 88.9
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 4.3e-16 87.4 50 82.0
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 4.3e-16 87.4 63 66.7
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 4.3e-16 87.4 63 68.3
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 5.7e-16 87.0 63 69.8
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 5.7e-16 87.0 63 66.7
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 5.7e-16 87.0 67 67.2
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.7e-16 87.0 50 80.0
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 7.4e-16 86.7 61 68.9
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 7.4e-16 86.7 66 68.2
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 7.4e-16 86.7 66 68.2
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 7.4e-16 86.7 50 80.0
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 7.4e-16 86.7 50 80.0
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 7.4e-16 86.7 50 80.0
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 7.4e-16 86.7 61 70.5
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 7.4e-16 86.7 44 88.6
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 9.6e-16 86.3 44 88.6
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 9.6e-16 86.3 62 66.1
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 9.6e-16 86.3 62 66.1
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 9.6e-16 86.3 54 70.4
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 1.3e-15 85.9 44 88.6
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.3e-15 85.9 61 67.2
BcaB04g17345 Brassica carinata HOM05D004588 ORTHO05D005365 1.6e-15 85.5 46 82.6
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 1.6e-15 85.5 46 82.6
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 1.6e-15 85.5 46 82.6
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 2.1e-15 85.1 53 73.6
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 2.1e-15 85.1 61 70.5
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 2.8e-15 84.7 63 68.3
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 2.8e-15 84.7 63 68.3
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 2.8e-15 84.7 46 87.0
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 2.8e-15 84.7 61 67.2
BraA08t32393Z Brassica rapa HOM05D004588 ORTHO05D005365 3.7e-15 84.3 43 86.0
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.7e-15 84.3 45 84.4
PSO170G5232 Papaver somniferum HOM05D004588 ORTHO05D005365 3.7e-15 84.3 47 83.0
PSO407G0251 Papaver somniferum HOM05D004588 ORTHO05D005365 3.7e-15 84.3 47 83.0
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 3.7e-15 84.3 66 66.7
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 4.8e-15 84.0 45 82.2
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 4.8e-15 84.0 46 80.4
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 4.8e-15 84.0 46 80.4
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 4.8e-15 84.0 45 84.4
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 4.8e-15 84.0 46 80.4
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 4.8e-15 84.0 65 67.7
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 4.8e-15 84.0 63 65.1
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.8e-15 84.0 50 78.0
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.8e-15 84.0 50 78.0
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.8e-15 84.0 50 78.0
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 4.8e-15 84.0 53 71.7
PGSC0003DMG400002922 Solanum tuberosum HOM05D004588 ORTHO05D005365 4.8e-15 84.0 48 79.2
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 4.8e-15 84.0 61 67.2
AT1G49400 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 6.3e-15 83.6 46 80.4
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 6.3e-15 83.6 61 68.9
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 6.3e-15 83.6 63 65.1
Solyc12g009380.2 Solanum lycopersicum HOM05D004588 ORTHO05D005365 6.3e-15 83.6 44 84.1
Sopen12g004370 Solanum pennellii HOM05D004588 ORTHO05D005365 6.3e-15 83.6 44 84.1
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 6.3e-15 83.6 63 68.3
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 8.2e-15 83.2 64 65.6
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 8.2e-15 83.2 45 84.4
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 8.2e-15 83.2 57 70.2
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 8.2e-15 83.2 57 70.2
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.1e-14 82.8 64 65.6
BcaB06g25942 Brassica carinata HOM05D004588 ORTHO05D005365 1.4e-14 82.4 64 64.1
CARHR039400 Cardamine hirsuta HOM05D004588 ORTHO05D005365 1.4e-14 82.4 46 78.3
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 1.4e-14 82.4 65 67.7
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 1.4e-14 82.4 61 68.9
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 1.4e-14 82.4 46 84.8
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 1.4e-14 82.4 46 84.8
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 1.4e-14 82.4 45 84.4
THA.LOC104798808 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 1.4e-14 82.4 63 63.5
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 1.4e-14 82.4 61 68.9
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 1.4e-14 82.4 63 57.1
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 1.8e-14 82.0 77 57.1
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 1.8e-14 82.0 61 68.9
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 2.4e-14 81.6 64 62.5
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 2.4e-14 81.6 61 65.6
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 3.1e-14 81.3 64 67.2
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 3.1e-14 81.3 56 69.6
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 4.1e-14 80.9 63 66.7
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 4.1e-14 80.9 63 63.5
Prupe.1G001800 Prunus persica HOM05D004588 ORTHO05D005365 5.3e-14 80.5 43 81.4
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 6.9e-14 80.1 64 67.2
Peaxi162Scf00474g00216 Petunia axillaris HOM05D004588 ORTHO05D005365 6.9e-14 80.1 53 66.0
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 6.9e-14 80.1 65 60.0
A05p30670 Brassica napus HOM05D004588 ORTHO05D005365 9.0e-14 79.7 63 61.9
C05p46550 Brassica napus HOM05D004588 ORTHO05D005365 9.0e-14 79.7 63 61.9
BolC5t33384H Brassica oleracea HOM05D004588 ORTHO05D005365 9.0e-14 79.7 63 61.9
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.0e-13 78.6 61 63.9
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 2.6e-13 78.2 61 63.9
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 2.6e-13 78.2 62 64.5
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 5.9e-13 77.0 64 56.2
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 7.6e-13 76.6 44 72.7
Nitab4.5_0000170g0150 Nicotiana tabacum HOM05D004588 ORTHO05D005365 1.0e-12 76.3 61 60.7
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 1.3e-12 75.9 56 57.1
Oeu036964.1 Olea europaea HOM05D004588 ORTHO05D005365 5.0e-12 73.9 46 69.6
FAN04G2398 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.9e-11 72.0 50 72.0
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 2.5e-11 71.6 61 59.0
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 3.2e-11 71.2 41 78.0
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 7.2e-11 70.1 63 57.1
Manes.03G098816 Manihot esculenta HOM05D004588 ORTHO05D005365 4.6e-10 67.4 51 68.6
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 4.6e-10 67.4 45 62.2
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.9e-09 64.3 87 43.7
AUR62001361 Chenopodium quinoa HOM05D004588 ORTHO05D005365 6.7e-09 63.5 53 67.9
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 1.5e-08 62.4 61 47.5
CSS0016928 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 1.9e-08 62.0 49 67.3
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 7.4e-08 60.1 45 68.9
A08p04010 Brassica napus HOM05D004588 ORTHO05D005365 6.3e-07 57.0 49 57.1
BraA08t32429Z Brassica rapa HOM05D004588 ORTHO05D005365 6.3e-07 57.0 49 57.1
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 8.2e-07 56.6 32 78.1
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 8.2e-07 56.6 32 78.1
A08p03610 Brassica napus HOM05D004588 ORTHO05D005365 1.1e-06 56.2 33 75.8
Peaxi162Scf00047g02426 Petunia axillaris HOM05D000445 ORTHO05D005365 1.1e-06 56.2 41 63.4
MCO14G513 Micromonas commoda HOM05D004588 ORTHO05D005365 4.1e-06 54.3 41 58.5


User provided reference genes

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