Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 4.2e-184 647.9 330 100.0
AUR62031425 Chenopodium quinoa HOM05D034504 ORTHO05D026482 1.7e-36 157.5 222 43.7
AUR62021117 Chenopodium quinoa HOM05D034504 ORTHO05D026482 2.6e-32 143.7 220 42.7
Ah.07g206550 Amaranthus hybridus HOM05D034504 ORTHO05D026482 6.4e-23 112.5 319 34.8
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.6e-16 90.5 333 29.4
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.6e-16 90.5 283 30.4
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.4e-16 90.1 335 29.6
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 4.4e-16 89.7 316 31.0
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 5.8e-16 89.4 337 29.1
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 7.6e-16 89.0 262 31.7
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 2.2e-15 87.4 336 28.6
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 2.2e-15 87.4 357 29.4
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 8.4e-15 85.5 313 31.3
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.1e-14 85.1 333 29.4
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 1.4e-14 84.7 250 30.8
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.4e-14 84.7 292 28.8
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 1.4e-14 84.7 256 31.6
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 2.4e-14 84.0 268 32.1
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 3.2e-14 83.6 346 28.0
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 7.1e-14 82.4 331 29.3
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.2e-13 81.6 352 29.0
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.6e-13 81.3 259 32.0
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 1.6e-13 81.3 273 30.4
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 2.7e-13 80.5 229 28.4
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 3.5e-13 80.1 263 29.3
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 3.5e-13 80.1 276 30.4
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 3.5e-13 80.1 287 31.7
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.6e-13 79.7 309 28.8
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 6.0e-13 79.3 329 30.7
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 6.0e-13 79.3 321 30.2
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.0e-12 78.6 261 27.2
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.3e-12 78.2 330 27.3
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.3e-12 78.2 317 30.9
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 1.7e-12 77.8 283 30.0
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 1.7e-12 77.8 207 30.0
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 2.3e-12 77.4 315 29.2
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 2.3e-12 77.4 291 32.3
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 3.0e-12 77.0 336 29.2
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 3.0e-12 77.0 363 26.7
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.9e-12 76.6 313 28.1
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 5.1e-12 76.3 327 26.6
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 5.1e-12 76.3 206 29.6
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 5.1e-12 76.3 199 31.7
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 5.1e-12 76.3 321 28.7
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 6.6e-12 75.9 340 25.0
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 6.6e-12 75.9 280 28.6
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 8.6e-12 75.5 274 30.3
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 8.6e-12 75.5 319 26.3
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 1.1e-11 75.1 186 31.7
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 1.1e-11 75.1 208 29.3
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 1.5e-11 74.7 212 30.7
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.5e-11 74.7 255 28.2
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.9e-11 74.3 262 29.4
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 2.5e-11 73.9 206 29.1
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 2.5e-11 73.9 305 28.5
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 2.5e-11 73.9 204 29.4
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 3.3e-11 73.6 332 25.6
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 4.3e-11 73.2 334 27.2
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 4.3e-11 73.2 256 30.9
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 4.3e-11 73.2 264 29.2
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 5.6e-11 72.8 277 30.0
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 5.6e-11 72.8 258 30.6
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 5.6e-11 72.8 272 30.1
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 7.3e-11 72.4 258 30.6
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 7.3e-11 72.4 259 29.7
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 7.3e-11 72.4 299 28.4
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 7.3e-11 72.4 332 28.9
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 9.6e-11 72.0 339 28.6
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 9.6e-11 72.0 345 26.7
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 1.2e-10 71.6 296 25.7
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 1.6e-10 71.2 323 27.2
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.6e-10 71.2 251 31.1
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.1e-10 70.9 259 30.1
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 2.8e-10 70.5 209 33.5
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 2.8e-10 70.5 271 26.6
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.8e-10 70.5 255 28.2
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 3.6e-10 70.1 357 28.0
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 6.2e-10 69.3 183 29.5
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 6.2e-10 69.3 259 30.1
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 6.2e-10 69.3 255 28.2
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 6.2e-10 69.3 259 30.1
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 6.2e-10 69.3 254 28.3
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 6.2e-10 69.3 202 30.2
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 8.1e-10 68.9 306 26.8
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 1.1e-09 68.6 263 31.2
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.1e-09 68.6 326 26.7
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 1.1e-09 68.6 243 29.6
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 1.4e-09 68.2 319 28.5
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 1.4e-09 68.2 316 27.5
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 1.4e-09 68.2 280 29.3
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 1.4e-09 68.2 252 28.2
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.8e-09 67.8 265 27.9
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 2.4e-09 67.4 258 30.6
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 2.4e-09 67.4 315 26.0
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 2.4e-09 67.4 264 29.2
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.1e-09 67.0 256 27.7
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.1e-09 67.0 259 28.6
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 3.1e-09 67.0 285 27.4
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 4.0e-09 66.6 341 25.5
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 4.0e-09 66.6 314 28.0
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 4.0e-09 66.6 267 27.0
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 4.0e-09 66.6 269 27.9
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 5.2e-09 66.2 255 27.8
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 6.8e-09 65.9 265 29.8
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 6.8e-09 65.9 274 29.6
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 8.9e-09 65.5 285 27.7
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.2e-08 65.1 223 29.6
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 1.2e-08 65.1 283 27.2
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 1.2e-08 65.1 206 29.6
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.5e-08 64.7 208 27.9
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 4.4e-08 63.2 199 29.6
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 5.8e-08 62.8 256 28.1
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 5.8e-08 62.8 208 30.3
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 5.8e-08 62.8 295 28.8
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 5.8e-08 62.8 293 28.0
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 9.9e-08 62.0 252 27.0
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 9.9e-08 62.0 353 26.3
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 9.9e-08 62.0 325 26.5
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 9.9e-08 62.0 281 27.4
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 1.3e-07 61.6 261 27.6
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 2.2e-07 60.8 256 27.7
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.9e-07 60.5 325 25.8
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.9e-07 60.5 267 27.0
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 2.9e-07 60.5 210 27.6
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 2.9e-07 60.5 266 26.7
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 3.8e-07 60.1 263 27.0
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 4.9e-07 59.7 258 27.5
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 1.9e-06 57.8 258 26.4
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.9e-06 57.8 255 27.8
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.9e-06 57.8 215 29.3
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 2.4e-06 57.4 220 27.7
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 2.4e-06 57.4 219 26.5
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 3.2e-06 57.0 217 27.6
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 3.2e-06 57.0 256 27.3
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 3.2e-06 57.0 266 28.9
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 4.2e-06 56.6 316 23.7
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 5.4e-06 56.2 347 24.2
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 7.1e-06 55.8 258 27.9


User provided reference genes

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