Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 4.1e-170 601.3 300 100.0
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 6.3e-102 374.8 294 66.0
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.4e-98 363.6 291 64.6
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.3e-80 303.1 300 52.7
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 3.7e-78 295.8 275 56.7
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 7.0e-77 291.6 291 54.3
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.0e-75 287.7 285 55.4
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.2e-75 286.6 300 50.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 4.2e-74 282.3 294 51.7
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 7.2e-74 281.6 228 63.2
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.0e-72 277.7 281 52.0
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.0e-72 275.8 283 51.9
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.2e-72 275.4 297 50.2
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 8.8e-72 274.6 295 51.2
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 2.6e-71 273.1 267 53.9
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.3e-70 270.8 298 49.7
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.7e-70 270.4 286 52.4
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.8e-70 269.6 290 51.0
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.4e-69 267.3 291 50.9
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.8e-69 266.9 299 46.8
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 9.1e-69 264.6 263 54.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 9.1e-69 264.6 311 46.9
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.6e-68 263.8 274 51.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.3e-67 260.8 286 49.7
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.7e-67 260.4 272 52.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.2e-67 260.0 300 48.7
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.9e-67 259.6 291 48.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.8e-67 259.2 293 48.5
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 3.8e-67 259.2 309 49.5
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.0e-67 258.8 291 48.1
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.1e-66 257.7 291 48.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 4.2e-66 255.8 279 50.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 9.4e-66 254.6 300 48.3
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.2e-65 254.2 279 50.2
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.7e-65 253.1 267 48.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 6.1e-65 251.9 287 50.2
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.0e-64 249.2 281 50.5
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.2e-63 247.7 293 46.1
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.5e-63 247.3 291 46.4
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.5e-63 247.3 268 51.5
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.0e-63 246.9 268 49.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 2.6e-63 246.5 259 50.2
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 3.4e-63 246.1 282 49.3
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.7e-62 243.8 295 47.1
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 8.3e-62 241.5 293 48.5
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.3e-62 241.5 293 48.5
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.3e-62 241.5 293 48.8
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.8e-61 240.4 276 51.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.1e-61 239.6 285 47.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 5.4e-61 238.8 263 49.8
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 9.2e-61 238.0 282 48.6
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-60 237.7 293 47.8
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-60 237.7 293 47.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.2e-60 237.7 276 49.6
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.2e-60 237.7 267 49.8
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.2e-60 237.7 276 51.1
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.0e-60 236.9 288 47.9
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.0e-59 234.6 294 46.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.3e-59 234.2 255 49.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.9e-58 230.3 282 48.2
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 3.3e-58 229.6 279 45.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.5e-58 228.0 325 43.4
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.1e-57 226.9 291 45.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.8e-57 226.5 294 45.9
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 8.0e-57 224.9 282 47.9
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.3e-56 223.4 285 44.6
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.4e-55 219.2 286 44.8
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 8.3e-54 214.9 272 43.8
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 3.2e-53 213.0 286 43.4
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 4.1e-53 212.6 287 44.6
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.6e-52 210.7 210 53.8
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.7e-52 209.9 265 46.4
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.5e-52 209.5 292 41.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.3e-51 207.6 280 41.4
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-51 207.6 296 43.2
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.5e-50 204.1 292 41.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.2e-49 201.1 275 41.5
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 8.0e-49 198.4 282 40.4
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.8e-48 197.2 282 40.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.5e-47 194.1 214 50.5
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 7.5e-47 191.8 284 39.1
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.7e-46 190.7 301 38.9
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 6.4e-46 188.7 204 50.5
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.4e-45 185.7 198 51.0
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.3e-43 181.0 330 39.1
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.7e-43 180.6 295 37.3
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 6.2e-41 172.2 208 46.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.8e-40 170.6 191 49.2
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.6e-39 166.8 290 39.0
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.6e-39 166.8 144 62.5
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.9e-37 160.6 255 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.5e-36 156.4 291 35.7
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 3.5e-36 156.4 186 47.8
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.5e-34 151.0 236 41.5
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.9e-34 150.6 222 38.7
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.8e-33 146.7 225 38.2
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 6.2e-33 145.6 107 74.8
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.5e-31 141.0 288 34.0
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 5.8e-31 139.0 261 34.9
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.2e-30 137.1 298 33.6
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.4e-30 135.6 228 35.1
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.4e-30 135.6 204 41.2
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.9e-29 134.0 126 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.6e-28 131.0 267 33.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-28 131.0 273 33.7
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 3.5e-28 129.8 195 39.0
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.3e-27 127.1 142 51.4
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.8e-25 120.2 209 36.8
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 8.1e-25 118.6 242 34.7
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.0e-23 114.0 97 64.9
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.9e-22 109.4 296 29.7
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 9.3e-21 105.1 112 54.5
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 7.8e-20 102.1 103 54.4
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 3.0e-19 100.1 332 27.1
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-17 94.7 81 63.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-17 94.7 81 63.0
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 3.6e-17 93.2 172 34.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 4.8e-17 92.8 74 70.3
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.4e-16 91.3 148 39.2
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.8e-16 90.9 130 39.2
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 8.4e-14 82.0 195 30.8
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.2e-12 78.2 61 63.9
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 2.7e-12 77.0 61 63.9
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 7.9e-12 75.5 61 62.3
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.3e-10 69.7 62 56.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 7.4e-10 68.9 49 65.3
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 1.2e-07 61.6 131 33.6


User provided reference genes

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