Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11658 Selenicereus undatus HOM05D000156 ORTHO05D005692 1.5e-52 209.5 125 100.0
Thecc.03G199800 Theobroma cacao HOM05D000156 ORTHO05D005692 4.7e-27 124.8 127 67.7
TWI14G0702 Tripterygium wilfordii HOM05D000156 ORTHO05D005692 3.0e-26 122.1 127 69.3
Gohir.A12G249600 Gossypium hirsutum HOM05D000156 ORTHO05D005692 1.2e-25 120.2 127 66.1
VMungo1309G2989 Vigna mungo HOM05D000156 ORTHO05D005692 1.5e-25 119.8 132 68.2
COL.COLO4_16770 Corchorus olitorius HOM05D000513 ORTHO05D007779 2.0e-25 119.4 128 67.2
Glyma.06G129300 Glycine max HOM05D000156 ORTHO05D005692 2.6e-25 119.0 132 69.7
Gohir.D12G250400 Gossypium hirsutum HOM05D000156 ORTHO05D005692 3.4e-25 118.6 127 65.4
Gorai.008G268500 Gossypium raimondii HOM05D000156 ORTHO05D005692 3.4e-25 118.6 127 65.4
Duzib205G0054 Durio zibethinus HOM05D000156 ORTHO05D005692 4.4e-25 118.2 127 64.6
FvH4_7g31490 Fragaria vesca HOM05D000156 ORTHO05D005692 5.8e-25 117.9 129 61.2
FAN06G0347 Fragaria x ananassa HOM05D000156 ORTHO05D005692 5.8e-25 117.9 129 61.2
FAN06G2724 Fragaria x ananassa HOM05D000156 ORTHO05D005692 5.8e-25 117.9 129 61.2
FAN10G0121 Fragaria x ananassa HOM05D000156 ORTHO05D005692 7.5e-25 117.5 129 61.2
FAN10G3506 Fragaria x ananassa HOM05D000156 ORTHO05D005692 7.5e-25 117.5 129 59.7
Duzib084G0055 Durio zibethinus HOM05D000156 ORTHO05D005692 9.8e-25 117.1 126 65.9
Hma1.2p1_0404F.1_g145330 Hydrangea macrophylla HOM05D000156 ORTHO05D005692 2.9e-24 115.5 126 65.9
EL10Ac3g05275 Beta vulgaris HOM05D000156 ORTHO05D005692 3.7e-24 115.2 129 69.0
Phvul.009G052200 Phaseolus vulgaris HOM05D000156 ORTHO05D005692 3.7e-24 115.2 129 68.2
Lalb_Chr08g0240211 Lupinus albus HOM05D000156 ORTHO05D005692 6.4e-24 114.4 127 63.8
Lalb_Chr23g0271611 Lupinus albus HOM05D000156 ORTHO05D005692 6.4e-24 114.4 128 64.1
Actinidia34224 Actinidia chinensis HOM05D000156 ORTHO05D005692 8.3e-24 114.0 125 64.8
Cpa.g.sc3.92 Carica papaya HOM05D000156 ORTHO05D005692 1.1e-23 113.6 126 64.3
QL09p008741 Quercus lobata HOM05D000156 ORTHO05D005692 1.1e-23 113.6 126 64.3
Cfa016234 Carpinus fangiana HOM05D000156 ORTHO05D005692 1.4e-23 113.2 125 65.6
VMungo0647G1193 Vigna mungo HOM05D000156 ORTHO05D005692 1.9e-23 112.8 131 67.2
Hund21008 Selenicereus undatus HOM05D000156 ORTHO05D005692 2.4e-23 112.5 126 69.0
FAN03G3454 Fragaria x ananassa HOM05D000156 ORTHO05D005692 3.2e-23 112.1 129 65.9
FAN01G1839 Fragaria x ananassa HOM05D000156 ORTHO05D005692 5.4e-23 111.3 129 64.3
arahy.Tifrunner.gnm1.ann1.733TCI Arachis hypogaea HOM05D000156 ORTHO05D005692 9.2e-23 110.5 130 63.1
Glyma.04G235400 Glycine max HOM05D000156 ORTHO05D005692 9.2e-23 110.5 132 67.4
CiPaw.05G197300 Carya illinoinensis HOM05D000156 ORTHO05D005692 1.2e-22 110.2 125 61.6
Prupe.2G309500 Prunus persica HOM05D000156 ORTHO05D005692 1.2e-22 110.2 131 59.5
Psat5g076800 Pisum sativum HOM05D000156 ORTHO05D005692 1.6e-22 109.8 129 66.7
Actinidia08652 Actinidia chinensis HOM05D000156 ORTHO05D005692 2.0e-22 109.4 127 64.6
Sc13g0009910 Simmondsia chinensis HOM05D000156 ORTHO05D005692 2.7e-22 109.0 126 66.7
Migut.F00207 Erythranthe guttata HOM05D000156 ORTHO05D005692 3.5e-22 108.6 133 63.2
PGR042G0912 Punica granatum HOM05D000156 ORTHO05D005692 3.5e-22 108.6 128 64.8
CSS0002181 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D005692 4.6e-22 108.2 128 63.3
Sabra12G0015800 Salix brachista HOM05D000156 ORTHO05D005692 4.6e-22 108.2 128 64.8
Haze_00207 Corylus avellana HOM05D000156 ORTHO05D005692 7.8e-22 107.5 125 62.4
Phvul.001G075300 Phaseolus vulgaris HOM05D000156 ORTHO05D005692 1.0e-21 107.1 130 65.4
Psat6g034760 Pisum sativum HOM05D000156 ORTHO05D005692 1.0e-21 107.1 138 63.0
MD07G1288000 Malus domestica HOM05D000156 ORTHO05D005692 1.7e-21 106.3 131 62.6
RcHm_v2.0_Chr1g0380521 Rosa chinensis HOM05D000156 ORTHO05D005692 1.7e-21 106.3 128 64.8
vmacro10124 Vaccinium macrocarpon HOM05D000156 ORTHO05D005692 1.7e-21 106.3 128 61.7
Manes.01G183800 Manihot esculenta HOM05D000156 ORTHO05D005692 3.0e-21 105.5 128 62.5
Manes.02G143900 Manihot esculenta HOM05D000156 ORTHO05D005692 3.0e-21 105.5 128 64.8
Medtr3g091560 Medicago truncatula HOM05D000156 ORTHO05D005692 3.0e-21 105.5 128 64.1
Eucgr.A01455 Eucalyptus grandis HOM05D000156 ORTHO05D005692 3.9e-21 105.1 129 60.5
CANSAT21G2206 Cannabis sativa HOM05D000156 ORTHO05D005692 6.6e-21 104.4 125 62.4
Ciclev10019884m.g Citrus clementina HOM05D000156 ORTHO05D005692 6.6e-21 104.4 129 62.0
TPR.G11989 Trifolium pratense HOM05D000156 ORTHO05D005692 6.6e-21 104.4 139 61.2
Cc02_g01500 Coffea canephora HOM05D000156 ORTHO05D005692 8.6e-21 104.0 126 61.9
CiPaw.06G045900 Carya illinoinensis HOM05D000156 ORTHO05D005692 1.1e-20 103.6 126 62.7
GSVIVG01038556001 Vitis vinifera HOM05D000156 ORTHO05D005692 1.5e-20 103.2 131 62.6
MD01G1218100 Malus domestica HOM05D000156 ORTHO05D005692 2.5e-20 102.4 131 61.1
Oeu037178.1 Olea europaea HOM05D000156 ORTHO05D005692 2.5e-20 102.4 126 61.9
Oeu037179.1 Olea europaea HOM05D000156 ORTHO05D005692 2.5e-20 102.4 126 61.9
Lalb_Chr11g0066891 Lupinus albus HOM05D000156 ORTHO05D005692 3.3e-20 102.1 129 61.2
Potri.012G016200 Populus trichocarpa HOM05D000156 ORTHO05D005692 3.3e-20 102.1 128 59.4
Potri.015G012500 Populus trichocarpa HOM05D000156 ORTHO05D005692 4.3e-20 101.7 127 56.7
DCAR_020324 Daucus carota HOM05D000156 ORTHO05D005692 7.3e-20 100.9 131 64.1
TPR.G19372 Trifolium pratense HOM05D000156 ORTHO05D005692 9.5e-20 100.5 130 63.8
HanXRQChr01g0020471 Helianthus annuus HOM05D000156 ORTHO05D005692 1.6e-19 99.8 131 58.8
ECA248G0969 Erigeron canadensis HOM05D005282 ORTHO05D002071 2.1e-19 99.4 129 59.7
Lj3A904T80 Lonicera japonica HOM05D000156 ORTHO05D005692 2.1e-19 99.4 126 61.9
ClCG05G008970 Citrullus lanatus HOM05D000156 ORTHO05D005692 3.6e-19 98.6 132 62.1
MSTRG.27024 Avicennia marina HOM05D000156 ORTHO05D005692 6.2e-19 97.8 132 59.8
MELO3C008499.2 Cucumis melo HOM05D000156 ORTHO05D005692 6.2e-19 97.8 136 60.3
Medtr1g007920 Medicago truncatula HOM05D000156 ORTHO05D005692 6.2e-19 97.8 138 57.2
MSTRG.8650 Avicennia marina HOM05D000156 ORTHO05D005692 8.0e-19 97.4 133 59.4
Ca_16710_v3 Cicer arietinum L. HOM05D000156 ORTHO05D005692 8.0e-19 97.4 129 53.5
Gohir.D08G107000 Gossypium hirsutum HOM05D000156 ORTHO05D005692 8.0e-19 97.4 126 62.7
Sp5g12820 Schrenkiella parvula HOM05D000156 ORTHO05D005692 1.1e-18 97.1 138 56.5
Gorai.004G114300 Gossypium raimondii HOM05D000156 ORTHO05D005692 1.4e-18 96.7 126 62.7
Lj1g0012037 Lotus japonicus HOM05D000156 ORTHO05D005692 2.3e-18 95.9 132 60.6
TAR629G1391 Trochodendron aralioides HOM05D000156 ORTHO05D005692 2.3e-18 95.9 126 58.7
Lj1C1018T7 Lonicera japonica HOM05D000156 ORTHO05D005692 3.1e-18 95.5 128 60.2
Lj1C1021T2 Lonicera japonica HOM05D000156 ORTHO05D005692 3.1e-18 95.5 128 60.2
SGA_v2.0_scaffold192G40536 Striga asiatica HOM05D000156 ORTHO05D005692 3.1e-18 95.5 128 59.4
Glyma.14G159300 Glycine max HOM05D000156 ORTHO05D005692 4.0e-18 95.1 132 62.1
CsaV3_3G019820 Cucumis sativus L. HOM05D000156 ORTHO05D005692 5.2e-18 94.7 137 60.6
Sed0011018 Sechium edule HOM05D000156 ORTHO05D005692 6.8e-18 94.4 133 63.2
Gohir.A08G095724 Gossypium hirsutum HOM05D000156 ORTHO05D005692 1.2e-17 93.6 126 61.9
CSS0044772 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D005692 1.5e-17 93.2 130 57.7
Nn1g00265 Nelumbo nucifera HOM05D000156 ORTHO05D005692 1.5e-17 93.2 127 59.8
Actinidia06146 Actinidia chinensis HOM05D000156 ORTHO05D005692 2.0e-17 92.8 126 46.8
AT3G49260 Arabidopsis thaliana HOM05D000156 ORTHO05D005692 2.0e-17 92.8 138 55.8
MBI06_g13418_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D005692 2.0e-17 92.8 126 58.7
BcaB02g09582 Brassica carinata HOM05D000156 ORTHO05D005692 3.4e-17 92.0 136 57.4
Carub.0005s1548 Capsella rubella HOM05D000156 ORTHO05D005692 4.4e-17 91.7 138 57.2
PGSC0003DMG400009086 Solanum tuberosum HOM05D000156 ORTHO05D005692 5.8e-17 91.3 134 58.2
MBI07_g37057_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D005692 9.8e-17 90.5 125 56.8
Sed0019654 Sechium edule HOM05D000156 ORTHO05D005692 9.8e-17 90.5 130 58.5
AL5G29010 Arabidopsis lyrata HOM05D000156 ORTHO05D005692 1.3e-16 90.1 138 53.6
Thhalv10010338m.g Eutrema salsugineum HOM05D000156 ORTHO05D005692 1.3e-16 90.1 138 55.8
BcaC01g02398 Brassica carinata HOM05D000156 ORTHO05D005692 1.7e-16 89.7 138 48.6
BolC3t18823H Brassica oleracea HOM05D000156 ORTHO05D005692 1.7e-16 89.7 138 48.6
Nitab4.5_0007005g0030 Nicotiana tabacum HOM05D000156 ORTHO05D005692 1.7e-16 89.7 133 60.9
BraA06t25757Z Brassica rapa HOM05D000156 ORTHO05D005692 2.2e-16 89.4 138 48.6
SalBow4G2739 Salvia bowleyana HOM05D000156 ORTHO05D005692 2.2e-16 89.4 131 61.1
TAR375G0133 Trochodendron aralioides HOM05D000156 ORTHO05D005692 2.9e-16 89.0 127 55.1
BcaB01g00733 Brassica carinata HOM05D000156 ORTHO05D005692 3.7e-16 88.6 138 54.3
Sed0003090 Sechium edule HOM05D000156 ORTHO05D005692 3.7e-16 88.6 133 49.6
A06p18500 Brassica napus HOM05D000156 ORTHO05D005692 6.4e-16 87.8 138 55.1
BraA06t24928Z Brassica rapa HOM05D000156 ORTHO05D005692 6.4e-16 87.8 138 55.1
ClCG00G004130 Citrullus lanatus HOM05D000156 ORTHO05D005692 1.1e-15 87.0 127 59.1
ClCG01G000410 Citrullus lanatus HOM05D000156 ORTHO05D005692 1.1e-15 87.0 127 59.1
C03p65700 Brassica napus HOM05D000156 ORTHO05D005692 1.4e-15 86.7 138 47.8
Dinv29275 Davidia involucrata HOM05D000156 ORTHO05D005692 1.4e-15 86.7 114 56.1
Nitab4.5_0005393g0020 Nicotiana tabacum HOM05D000156 ORTHO05D005692 1.4e-15 86.7 133 58.6
BcaC07g39397 Brassica carinata HOM05D000156 ORTHO05D005692 1.9e-15 86.3 138 55.8
A06p28140 Brassica napus HOM05D000156 ORTHO05D005692 1.9e-15 86.3 138 47.8
Aa31LG4G17670 Aethionema arabicum HOM05D000156 ORTHO05D005692 2.4e-15 85.9 139 53.2
Nn3g18974 Nelumbo nucifera HOM05D000156 ORTHO05D005692 5.4e-15 84.7 131 56.5
C08p24270 Brassica napus HOM05D000156 ORTHO05D005692 1.2e-14 83.6 138 55.1
BolC8t50044H Brassica oleracea HOM05D000156 ORTHO05D005692 1.2e-14 83.6 138 55.1
CAN.G481.15 Capsicum annuum HOM05D000156 ORTHO05D005692 1.2e-14 83.6 128 50.8
Rhsim09G0205900 Rhododendron simsii HOM05D000156 ORTHO05D005692 2.7e-14 82.4 91 67.0
Atru.chr12.2221 Acer truncatum HOM05D000156 ORTHO05D005692 1.0e-13 80.5 109 60.6
arahy.Tifrunner.gnm1.ann1.129FS0 Arachis hypogaea HOM05D000156 ORTHO05D005692 3.0e-13 79.0 146 51.4
arahy.Tifrunner.gnm1.ann1.M0S3BS Arachis hypogaea HOM05D000156 ORTHO05D005692 3.0e-13 79.0 146 53.4
Aqoxy7G00069 Aquilegia oxysepala HOM05D000156 ORTHO05D005692 5.1e-13 78.2 135 54.8
Sopen03g022890 Solanum pennellii HOM05D000156 ORTHO05D005692 8.6e-13 77.4 134 56.7
HPP92_027390 Vanilla planifolia HOM05D000156 ORTHO05D005692 1.5e-12 76.6 131 51.1
Peaxi162Scf00618g00342 Petunia axillaris HOM05D000156 ORTHO05D005692 1.9e-12 76.3 111 51.4
Sabra15G0010200 Salix brachista HOM05D000156 ORTHO05D005692 5.6e-12 74.7 88 63.6
MELO3C005888.2 Cucumis melo HOM05D000156 ORTHO05D005692 6.2e-11 71.2 127 54.3
CsaV3_5G000470 Cucumis sativus L. HOM05D000156 ORTHO05D005692 8.1e-11 70.9 129 55.0
PGSC0003DMG400019610 Solanum tuberosum HOM05D000156 ORTHO05D005692 1.1e-10 70.5 132 42.4
Lj1g0014352 Lotus japonicus HOM05D000156 ORTHO05D005692 5.2e-10 68.2 113 42.5
CAN.G312.4 Capsicum annuum HOM05D000156 ORTHO05D005692 1.5e-09 66.6 136 41.9
Solyc06g052010.2 Solanum lycopersicum HOM05D000156 ORTHO05D005692 7.5e-09 64.3 136 41.9
CARHR158130 Cardamine hirsuta HOM05D000156 ORTHO05D005692 9.9e-09 63.9 89 59.6
Sopen06g018060 Solanum pennellii HOM05D000156 ORTHO05D005692 1.7e-08 63.2 136 42.6
THA.LOC104815133 Tarenaya hassleriana HOM05D000156 ORTHO05D005692 2.9e-08 62.4 81 51.9
Lsat_1_v5_gn_1_95580 Lactuca sativa HOM05D000156 ORTHO05D005692 1.4e-07 60.1 106 42.5
ATR0602G248 Amborella trichopoda HOM05D000156 ORTHO05D005692 7.1e-07 57.8 99 53.5
Dinv35340 Davidia involucrata HOM05D000156 ORTHO05D005692 7.1e-07 57.8 69 68.1
CDE02G3200 Ceratophyllum demersum HOM05D000156 ORTHO05D005692 2.7e-06 55.8 125 38.4


User provided reference genes

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