Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.1e-119 433.3 214 100.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 7.0e-71 271.2 218 65.1
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.6e-70 269.2 216 67.6
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.1e-67 259.6 219 65.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.0e-66 255.4 196 66.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.5e-60 236.1 186 65.6
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.4e-57 225.3 219 58.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.0e-55 218.0 218 58.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.6e-54 216.9 224 57.1
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.0e-54 216.5 219 56.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.5e-54 215.7 210 56.7
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 5.9e-54 214.9 210 56.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.0e-53 214.2 215 57.2
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.3e-53 213.8 218 57.3
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.7e-53 213.4 218 55.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.2e-53 213.0 210 56.7
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.0e-53 211.8 216 56.5
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.0e-53 211.8 209 57.9
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.5e-53 211.5 189 59.8
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 8.5e-53 211.1 222 55.4
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.1e-52 210.7 217 56.7
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.5e-52 210.3 191 57.6
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.9e-52 209.9 224 55.4
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 2.5e-52 209.5 208 54.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.2e-52 209.1 219 55.3
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.2e-52 209.1 208 52.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.5e-52 208.4 213 58.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.2e-51 207.2 220 53.6
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.2e-51 207.2 188 57.4
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.1e-51 206.5 191 57.1
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.6e-51 205.7 214 54.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.7e-51 205.3 185 58.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.7e-51 205.3 187 60.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.1e-51 204.9 217 55.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 6.1e-51 204.9 186 58.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.1e-51 204.9 204 55.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 8.0e-51 204.5 187 57.8
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 8.0e-51 204.5 209 56.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.0e-50 204.1 214 56.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-50 203.8 184 59.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.4e-50 203.8 209 53.1
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-50 203.8 209 53.1
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.4e-50 203.8 209 53.1
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.8e-50 203.4 215 54.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.0e-50 202.6 185 58.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 3.0e-50 202.6 185 58.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 3.0e-50 202.6 185 58.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 3.0e-50 202.6 185 58.4
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.0e-50 202.6 194 58.8
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.0e-50 202.2 221 53.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.0e-50 202.2 223 55.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.0e-50 202.2 163 64.4
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 5.2e-50 201.8 185 58.4
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 5.2e-50 201.8 191 56.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 5.2e-50 201.8 183 57.4
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.2e-50 201.8 154 65.6
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 5.2e-50 201.8 219 53.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 6.8e-50 201.4 182 58.2
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 6.8e-50 201.4 184 58.2
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 6.8e-50 201.4 184 58.2
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 6.8e-50 201.4 183 56.8
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 8.8e-50 201.1 214 54.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-49 200.7 193 56.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.0e-49 199.9 211 50.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.6e-49 199.5 155 63.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.6e-49 199.5 209 52.2
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.6e-49 199.5 196 57.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.4e-49 199.1 156 63.5
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.4e-49 199.1 214 53.3
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.4e-49 198.7 217 52.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.4e-49 198.7 210 51.9
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 4.4e-49 198.7 204 55.9
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 4.4e-49 198.7 204 55.9
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 4.4e-49 198.7 204 55.9
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 5.7e-49 198.4 172 61.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 7.5e-49 198.0 208 53.4
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 9.8e-49 197.6 211 54.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 9.8e-49 197.6 155 65.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-48 197.2 209 51.7
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.7e-48 196.8 214 55.6
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.2e-48 196.4 183 56.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.7e-48 195.7 208 51.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 8.3e-48 194.5 196 54.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.1e-47 194.1 219 52.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-47 193.4 223 51.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.8e-47 193.4 272 44.9
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.1e-47 192.6 187 56.7
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.1e-47 192.6 204 55.9
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.1e-47 192.2 155 63.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.1e-47 192.2 184 58.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.4e-47 191.8 203 54.2
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.2e-47 191.0 217 51.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.7e-46 189.5 222 51.4
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.5e-46 189.1 178 56.7
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 7.7e-46 188.0 154 60.4
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 7.7e-46 188.0 210 50.0
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-45 187.6 210 53.8
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.7e-45 186.8 224 50.4
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-45 186.4 211 51.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-45 186.0 178 56.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 6.6e-45 184.9 215 52.6
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 6.6e-45 184.9 203 52.7
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 9.5e-44 181.0 208 50.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.8e-43 179.5 223 48.4
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 8.0e-43 177.9 173 55.5
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.0e-42 177.6 204 50.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.4e-42 177.2 214 50.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.8e-42 174.9 154 59.1
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.9e-42 174.5 159 55.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.5e-41 173.7 122 69.7
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.6e-41 172.9 212 48.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.4e-41 172.6 146 60.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 5.7e-41 171.8 208 50.5
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.3e-40 170.6 121 66.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.2e-40 169.9 121 66.9
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-40 169.5 231 47.6
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.4e-39 167.2 185 51.4
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.0e-38 163.3 111 72.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 5.9e-38 161.8 118 66.1
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.8e-38 161.4 217 45.6
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.3e-37 159.8 222 45.0
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.5e-36 156.4 159 56.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.3e-36 156.0 214 46.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.3e-36 156.0 214 46.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.6e-33 146.4 315 35.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.4e-33 145.6 102 70.6
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 7.0e-31 138.3 121 54.5
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.5e-28 130.6 161 47.8
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.9e-28 130.2 152 46.1
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.5e-28 129.8 151 46.4
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.3e-28 129.4 93 66.7
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.6e-27 127.1 151 43.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 6.2e-27 125.2 124 49.2
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.8e-26 121.7 112 49.1
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 2.2e-24 116.7 81 71.6
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.9e-23 113.6 214 38.8
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 4.6e-22 109.0 92 52.2
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 5.1e-21 105.5 80 65.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.0e-18 95.9 139 46.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 5.2e-18 95.5 145 49.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.8e-16 89.4 67 62.7
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.8e-16 89.4 67 62.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.0e-13 79.7 68 58.8
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 6.0e-06 55.5 109 33.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 7.8e-06 55.1 49 55.1


User provided reference genes

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