Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.2e-251 872.8 499 100.0
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.3e-173 613.6 515 72.4
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.7e-160 570.1 487 71.9
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.9e-159 566.6 481 71.5
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 3.2e-159 565.8 447 75.2
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 5.4e-159 565.1 448 73.9
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 7.1e-159 564.7 457 73.1
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.7e-158 562.8 446 75.1
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.5e-158 562.4 497 70.4
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.5e-158 562.4 438 74.9
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.3e-157 560.5 446 73.8
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 6.6e-157 558.1 467 72.2
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.1e-156 557.4 445 74.4
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.8e-155 552.7 502 71.1
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.8e-155 552.7 457 72.0
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.8e-155 552.7 457 72.4
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 4.8e-155 552.0 431 74.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.1e-154 550.8 443 74.0
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 3.1e-154 549.3 440 74.8
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 4.0e-154 548.9 446 74.0
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.2e-153 547.4 476 63.4
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 7.6e-153 544.7 425 75.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.8e-152 542.3 501 66.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 4.2e-151 538.9 510 64.9
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.3e-151 537.7 455 72.3
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 2.1e-150 536.6 448 73.4
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.5e-150 535.8 437 75.1
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 6.0e-150 535.0 447 73.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 6.0e-150 535.0 427 76.1
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 7.9e-150 534.6 457 70.7
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 7.9e-150 534.6 489 62.2
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.3e-149 533.9 456 70.6
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.9e-149 532.3 511 65.2
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 5.1e-149 531.9 508 68.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 8.7e-149 531.2 444 70.0
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.5e-148 530.4 466 71.7
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 9.6e-148 527.7 461 69.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.1e-147 526.6 449 73.5
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.8e-147 526.2 459 72.1
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.8e-147 526.2 400 77.0
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.4e-146 523.9 452 72.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.4e-146 523.9 455 71.0
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.1e-146 522.7 456 71.7
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.3e-146 521.9 442 72.2
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.0e-146 521.2 447 72.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.2e-145 520.8 459 71.7
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.0e-145 520.0 459 70.8
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.6e-145 519.6 495 64.4
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.2e-144 516.5 469 69.5
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.8e-144 515.8 489 67.5
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 6.5e-144 515.0 436 74.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.4e-143 513.8 448 72.5
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 4.2e-143 512.3 502 66.7
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 4.2e-143 512.3 504 66.7
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 4.2e-143 512.3 431 74.7
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 5.5e-143 511.9 402 74.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 9.3e-143 511.1 491 66.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-142 510.4 469 68.7
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.6e-142 508.8 496 67.5
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 7.9e-142 508.1 381 77.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 6.7e-141 505.0 473 67.7
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 8.7e-141 504.6 485 61.6
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 8.7e-141 504.6 503 64.0
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.1e-140 504.2 444 71.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.5e-140 503.1 435 71.7
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 5.7e-140 501.9 587 53.7
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 9.6e-140 501.1 467 68.3
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.6e-139 500.4 462 69.5
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.1e-139 500.0 462 66.0
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-139 500.0 433 71.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.1e-139 500.0 455 69.5
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 6.2e-139 498.4 473 68.9
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 8.2e-139 498.0 457 69.4
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.1e-138 497.7 463 67.0
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.4e-138 497.3 409 73.8
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 4.1e-138 495.7 430 69.3
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 6.9e-138 495.0 488 65.8
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 6.9e-138 495.0 472 65.5
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 6.9e-138 495.0 506 61.5
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 9.0e-138 494.6 457 67.2
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.5e-137 493.8 441 72.6
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.4e-137 492.7 433 70.7
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.7e-136 490.3 445 69.4
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.9e-136 489.6 507 63.3
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 5.0e-136 488.8 430 69.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 5.0e-136 488.8 472 65.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-135 487.6 462 64.9
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.1e-135 487.6 462 64.9
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.4e-135 487.3 430 68.8
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.2e-135 486.1 492 63.4
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 4.2e-135 485.7 393 76.3
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 5.5e-135 485.3 454 66.3
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.6e-134 483.8 452 66.4
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.1e-134 483.4 457 65.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.1e-134 483.4 457 65.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 3.5e-134 482.6 457 65.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 2.3e-133 479.9 475 58.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.0e-133 479.6 467 67.0
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.7e-133 478.0 467 66.8
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.1e-132 477.6 531 61.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.5e-132 477.2 356 72.8
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-132 476.9 431 69.1
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.4e-130 470.7 484 64.7
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.7e-125 451.8 414 68.6
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.4e-122 444.1 432 66.9
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.2e-120 436.8 441 66.7
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-120 436.4 499 59.3
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 8.5e-120 434.9 465 63.0
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 9.4e-119 431.4 433 65.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.7e-118 429.1 416 65.4
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.4e-114 416.8 422 64.9
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.6e-113 413.3 463 60.3
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 7.2e-111 405.2 419 65.6
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 5.2e-109 399.1 482 59.1
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 6.3e-107 392.1 477 51.6
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.7e-104 384.0 458 53.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.4e-101 374.4 337 64.1
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.2e-101 372.5 355 66.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 4.4e-100 369.4 404 64.6
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.8e-99 366.7 400 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 5.4e-98 362.5 391 58.1
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.5e-92 344.4 282 66.0
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.7e-91 339.7 279 62.4
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.8e-90 337.4 362 67.1
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.6e-86 323.2 344 65.1
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.0e-80 305.1 605 40.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 8.9e-77 292.0 503 44.3
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.2e-75 287.3 264 59.8
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.9e-74 284.3 474 42.8
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.3e-72 277.3 291 67.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.1e-65 254.2 379 40.6
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-49 201.8 152 64.5
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 3.9e-48 196.8 131 74.0
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.1e-45 188.7 181 56.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-45 187.6 141 63.8
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.0e-45 185.7 141 63.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-44 185.3 141 63.1
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.9e-40 170.2 168 54.8
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-38 163.7 134 59.7
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.4e-37 161.8 134 59.7
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.9e-33 146.0 171 49.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.9e-33 146.0 128 58.6
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.9e-32 143.7 95 75.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.5e-28 131.7 504 26.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.6e-28 131.0 95 69.5
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.0e-25 119.8 74 75.7
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.6e-22 111.7 90 62.2
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-18 98.6 68 70.6
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.2e-17 95.5 208 33.7
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 3.0e-16 90.9 57 78.9
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.3e-14 85.5 55 72.7
Ah.07g197920 Amaranthus hybridus HOM05D004623 ORTHO05D005100 4.1e-13 80.5 110 51.8
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.9e-13 79.7 71 63.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.5e-12 78.6 122 40.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.9e-12 76.6 52 73.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 2.7e-09 67.8 57 63.2


User provided reference genes

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